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. 2013 Jun 26;8(6):e67116. doi: 10.1371/journal.pone.0067116

Table 4. 20 most differentially expressed annotated genes in L1/L2, L2/L3, and L3/L4 libraries based on expressed tag frequency.

Gene ID Relative abundant (TMP ratio) Function annotation Fragment (bp)
L1/L2 libraries
L21966 15.747 Pectinesterase-2 precursor 1068
L6372 12.111 Non-specific lipid-transfer protein 558
L4842 11.182 Primary amine oxidase-like 355
L19738 10.569 Inositol oxygenase 924
L5740 9.611 MLP-like protein 28 456
L5559 9.525 Glycerophosphoryl diester phosphodiesterase 489
L9661 9.26 Extensin (class I) 198
L4093 9.23 Formamidase 291
L11656 9.12 Vacuolar-processing enzymeprecursor 1464
L14179 8.94 Receptor protein kinase-like protein 402
L24462 8.93 Chaperone protein dnaJ 8 234
L19479 8.81 CytochromeP45082C4 1479
L22249 8.8 Peroxidase 64-like isoform 2 933
L9369 8.73 Rop guanine nucleotide exchange factor 2 219
L13340 8.65 G-type lectinS-receptor-likeserine 1484
L15631 8.41 Fiber expressed protein 345
L16154 8.33 Ethylene responsive transcription factor 927
L7272 8.29 SAUR family protein 234
L3989 8.28 Calcium-dependent protein kinase 783
L2349 8.20 Sucrose synthase 519
L2/L3 libraries
L9592 13.40 Cytochrome P450 86A1 1530
L3363 12.66 Phytylbenzoquinone methyltranferase 810
L19686 11.81 3-ketoacyl-CoA synthase4 1499
L24558 10.83 CASP-like protein RCOM_1174750-like 480
L14401 10.58 GDSL esterase/lipase At2g23540-like 743
L13523 9.98 Transcription factor bHLH80 450
L9063 9.97 Auxin response factor 2 711
L11556 9.67 E3 ubiquitin-protein ligase UPL4-like 699
L3219 9.43 Starch-branching enzymeI 2205
L6212 9.19 NADH dehydrogenase 291
L4985 9.14 Sugar transporter 1470
L2123 8.98 Calcineurin subunit B isoform 1 231
L2369 8.97 Vacuolar H+-pyrophosphatase 300
L21145 8.96 ABC transporter family protein 420
L4307 8.95 Ethylene-responsive transcription factor ERF114; 804
L18002 8.90 Xanthine dehydrogenase 486
L26121 8.67 Malate dehydrogenase [NADP] 254
L6411 8.44 ATP synthase subunit beta 1461
L7701 8.40 Calcium-dependent protein kinase 30 1005
L378 8.30 1-aminocyclopropane-1-carboxylate oxidase 822
L3/L4 libraries
L22026 13.72 Basic 7S globulin 962
L18835 12.626 Omega-hydroxypalmitate O-feruloyl Transferase 1361
L134 11.97 Alpha-expansin 3 750
L4954 11.91 Extensin 513
L6449 11.01 Gibberellin-regulated protein 6 315
L3691 10.98 Gibberellin 20 oxidase 289
L3566 10.56 Ethylene-responsive transcription factor ERF025 393
L19429 10.48 ATPase subunit 285
L24010 10.41 F-box family protein 1266
L4407 10.40 Heat shock protein70 1188
L15631 10.39 Fiber expressed protein 345
L7453 10.12 Glutathione S-transferase 411
L8862 10.09 UDP-glycosyltransferase89B2 1107
L2616 9.62 Sucrose synthase 1131
L3393 9.56 Cell wall-associated hydrolase 495
L309 9.39 ERF3 transcription factor 498
L15819 9.19 UDP-glycosyltransferase 88A 1407
L23091 9.15 EF-hand calcium-binding protein 516
L8032 8.97 WD repeat-containing protein 18 627
L10302 8.75 Patatin group A-3 1014
L1/L2 libraries
L16154 8.29 Ethylene-responsive transcription factorERF017 348
L1375 8.18 CBF/DREB3 transcription factor 609
L17409 8.04 Transcription factor bHLH35 726
L22245 7.81 AP2 domain class transcription factor 923
L5201 7.80 WRKY transcription factor 6-like 666
L161 7.31 KNAT3-like transcription factor 747
L7327 6.81 bZIP transcription factor 60 495
L3810 6.47 GRAS family transcription factor 308
L959 6.46 Transcription factor hy5 435
L24021 6.06 MYB transcription factor 594
L5723 6.05 MADS-box transcription factor 744
L16316 5.52 Transcription factor TCP9 1215
L4285 5.49 Heat stress transcription factor A-4b 960
L10423 5.48 NAC domain-containing protein 471
L2/L3 libraries
L13523 9.98 Transcription factor bHLH80 450
L4307 8.95 Ethylene-responsive transcription factor ERF114 804
L7947 8.19 Homeobox protein BEL1 homolog 336
L3540 8.100 Trihelix transcription factor GT-1 972
L9587 7.97 NAC domain protein NAC1 710
L1325 7.71 Transcription factor ICE1 477
L7126 6.70 Transcription factor MYB59-like 345
L3348 6.98 Transcription factor SPATULA 801
L21444 5.55 NF-X1-type zinc finger protein NFXL1-like 2277
L6302 5.54 KANADI like transcription factor 834
L545 5.52 WRKY transcription factor 44 1125
L4641 5.2 Scarecrow-like transcription factor PAT1-like 1644
L20454 4.71 BZIP domain class transcription factor 60 495
L1140 4.70 Calmodulin-binding transcription factor SR3L 345
L25749 3.92 GATA domain class transcription factor 279
L12403 3.39 HSF transcription factor 384
L6635 3.36 HD domain class transcription factor 258
L5314 2.35 Transcription factor KAN2 447
L25842 1.34 Zinc finger protein CONSTANS-LIKE 894
L3/L4 libraries
L3566 10.56 Ethylene-responsive transcription factor ERF025 393
L5181 10.40 HSP transcription factor 384
L309 9.39 ERF3 transcription factor 498
L18531 8.55 Transcription factor HEC1 699
L6220 7.19 WRKY transcription factor 70 951
L5632 6.98 Transcription factor AS1 1071