Table 3.
Characteristics of the six new conformational classes found by clustering
Class ID | Description | N | δ | ϵ | ζ | α + 1 | β + 1 | γ + 1 | δ + 1 | χ | χ + 1 |
---|---|---|---|---|---|---|---|---|---|---|---|
35 |
BI-to-A, β+1 in g+, α+1/γ+1 crank (high t/t), anti/low anti |
14 |
136 |
199 |
288 |
253 |
73 |
168 |
87 |
264 |
187 |
97 |
BII-DNA, α+1/γ+1 crank(t/g+), anti/low anti |
13 |
142 |
294 |
110 |
149 |
198 |
55 |
151 |
260 |
185 |
113 |
BI-DNA, ϵ/ζ in t/g+, α+1/γ+1 crank (g+/t), anti/syn |
13 |
143 |
206 |
61 |
82 |
204 |
192 |
146 |
242 |
68 |
114 |
BI-DNA, α+1/γ+1 crank (g-/g-), high β+1, anti/syn |
18 |
141 |
201 |
282 |
307 |
258 |
304 |
151 |
236 |
65 |
115 |
BI DNA, high ϵ, anti/low anti |
22 |
140 |
275 |
280 |
300 |
189 |
61 |
148 |
265 |
208 |
117 | BI-DNA, β+1 in g+, α+1/γ+1 crank (high t/t), anti/low anti | 19 | 139 | 196 | 286 | 249 | 73 | 172 | 145 | 263 | 211 |
“Class ID” is a symbolic label of the class. “Description” is a short annotation of the class. “N” is the number of suites (dinucleotides) with the given class membership. Values of torsions represent the arithmetic means for the individual classes. Torsions are defined in Figure 2.