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Evaluation on 100-K simulated reads of length 125 bp with at most 
differences
| Program | Conf (%) | Err (%) | Time (s) |
|---|---|---|---|
| bwa-simR | 93.1 | 0.06 | 100 |
| bwbble-simR | 92.9 | 0.05 | 11 295 |
| bwa-simNA | 92.7 | 0.09 | 110 |
| bwbble-simNA | 93.4 | 0.04 | 10 896 |
| bwa-simHG | 92.6 | 0.11 | 107 |
| bwbble-simHG | 93.3 | 0.06 | 10 892 |
Note: The percentage of confidently aligned reads (Conf), misaligned confident reads (Err) and sequential execution time of each program are reported.
