Fig. 2.

Two transcripts reported by Cufflinks. The top one maps to a known gene named Caml3, and the bottom one does not map to any known gene. Two transcripts are aligned by their shared fragments in the plot. Owing to the space limitation, the top figure is truncated, and only shows the region containing shared fragments. The dashed line indicates the truncated boundary. The three vertical lines in purple represent three splice junctions in the top transcript