Table 1.
Evaluation of all methods on the ovarian cancer dataset
| F1 score | Cancer miRNAs |
Expression correlation | Number of genes/module | ||
|---|---|---|---|---|---|
| F1 | Precision | Recall | |||
| PIMiM | 0.3768 | 0.3230 | 0.4522 | −0.0131 | 67.80 |
| SNMNMF | 0.3588 | 0.3197 | 0.4087 | 0.0745 | 79.26 |
| GroupMiR | 0.1227 | 0.2083 | 0.0870 | −0.0408 | 54.82 |
Note: The expression correlation values and number of genes are averaged across modules. Expression correlation: the correlation of expression values of miRNAs and mRNAs. Bold values are the best values for the column (highest or lowest depending on the context).