Skip to main content
. 2013 Jun 19;29(13):i344–i351. doi: 10.1093/bioinformatics/btt212

Table 2.

Number of reads (hard clipped at 200 bp) mapping with quality above the given thresholds

Inline graphic Inline graphic Inline graphic
Baseline 5 463 391 4 867 523 4 857 829
FlowgramFixer 5 617 599 5 098 930 5 088 117
Difference 154 208 231 407 230 288
Improvement (%) 2.8 4.8 4.7

Note: We used 20, 30 and 40 as Inline graphic thresholds, corresponding to mis-alignment probabilities of 0.01, 0.001 and 0.0001, respectively. FlowgramFixer is able to accurately map up to 4.8% more reads than the baseline.