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. 2013 Jun 19;29(13):i154–i161. doi: 10.1093/bioinformatics/btt236

Table 1.

Classification features

Group Feature Definition
1 m Number of compounds connected to >2 reactions.
u Number of unpaired compounds.
t Reaction type: 1—unpaired compounds on both sides of the reaction, 2—unpaired compounds on only one side, 3—no unpaired compounds.
h Number of chokepoint compounds.
c Number of compounds.
Inline graphic Number of compounds connected to >2 and <10 reactions.
Inline graphic Number of compounds connected to 10–50 reactions
Inline graphic Number of compounds connected to >50 reactions.
R Number of other reactions sharing a compound with this reaction.
Inline graphic Mean number of other reactions connected to each compound.
r1 Number of connections of the least connected compound.
r2 Number of connections of the second least connected compound.
r3 Number of connections of the third least connected compound.
r4 Number of connections of the fourth least connected compound.
2 e Eccentricity using unweighted edges,
Inline graphic Normalized eccentricity using unweighted edges.
ew Eccentricity using weighted edges
Inline graphic Normalized eccentricity using weighted edges
b Betweenness using unweighted edges
bw Betweenness using weighted edges
N Number of reactions in the connected component.
3 Inline graphic Fraction of reactions of type 1 or 2 in the network.
4 G Domain: 1—Bacteria, 2—Eukaryota, 3—Archaea.
D 1—species is related to disease, 0—species is not related to disease.

Note: The features chosen were divided into four groups as shown: 1—local, 2—semi-local, 3—global and 4—non-topological.