Table 2. In Vitro MYR Assay of Various Peptides Using Recombinant Wild-Type NMT1 and NMT1A160T.
NMT1a | |||||
---|---|---|---|---|---|
Protein of Originb | Substrate Assayed | Km (µM) | kcat (s−1) | kcat/Km (103 M−1⋅s−1) | |
ARFA1adf | GLSFAKLFRR | 29 ± 5 | 0.65 ± 0.03 | 21.9 | |
TRXh2 | GGALSTVF | 60 ± 17 | 0.28 ± 0.03 | 4.6 | |
TRXh7 | GSNVSSVH | 301 ± 41 | 0.26 ± 0.02 | 0.88 | |
TRXh8 | GANVSTPD | 545 ± 159 | 0.55 ± 0.11 | 1.0 | |
TRXh9 | GGSCVSKGK | 18 ± 3 | 0.027 ± 0.011 | 1.5 | |
PLL5 | GNGVTKLS | 12 ± 4 | 0.15 ± 0.07 | 11.9 | |
RPS5-like | GGCVSVQV | 2.4 ± 0.4 | 0.075 ± 0.001 | 31.7 | |
SOS3 | GCSVSKKK | 7.4 ± 2.2 | 0.091 ± 0.004 | 13.0 | |
SOS3 | Myr-CoA | 1.7 ± 0.3 | 0.153 ± 0.007 | 89 | |
NMT1A160Ta | |||||
Protein of Originb | Substrate Assayed | Km (µM) | kcat (s−1) | kcat/Km (103 M−1⋅s−1) | Reduction of kcat/Km (Fold versus Wild Type) |
ARFA1adf | GLSFAKLFRR | 68 ± 14 | 0.091 ± 0.006 | 1.3 | 16.5 |
TRXh2 | GGALSTVF | 197 ± 53 | 0.044 ± 0.001 | 0.22 | 21 |
TRXh7 | GSNVSSVH | 176 ± 54 | 0.05 ± 0.01 | 0.27 | 3.3 |
TRXh8 | GANVSTPD | 926 ± 301 | 0.18 ± 0.03 | 0.20 | 5 |
TRXh9 | GGSCVSKGK | 106 ± 28 | 0.029 ± 0.004 | 0.28 | 5.2 |
PLL5 | GNGVTKLS | 36 ± 2 | 0.028 ± 0.002 | 0.76 | 16 |
RPS5-like | GGCVSVQV | 50 ± 8 | 0.034 ± 0.002 | 0.67 | 47 |
SOS3 | GCSVSKKK | 57 ± 11 | 0.069 ± 0.004 | 1.18 | 11 |
SOS3 | Myr-CoA | 38 ± 11 | 0.062 ± 0.007 | 1.63 | 54 |
Kinetic parameters obtained from an in vitro continuous fluorigenic NMT assay and several N-terminal peptides (Traverso et al., 2013a).
N-terminal octapeptides (from amino acids 2 to 9) were derived from Arabidopsis proteins for which MYR was previously predicted and/or reported (Traverso et al., 2013a, 2013b). The kcat/Km value reflects the catalytic efficiency of each peptide to be MYRed by the NMT enzyme.