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. Author manuscript; available in PMC: 2013 Jun 27.
Published in final edited form as: J Hand Surg Eur Vol. 2009 Jul 8;34(5):643–650. doi: 10.1177/1753193409104564

Table 2. Primer sequences, the lengths of the amplified gene segments, and the conditions for the real-time PCR reactions.

Gene Forward primer sequence Reverse primer sequence Length of amplified gene segment Conditions for real-time PCR reactions
GAPDH 5′-TATGATTCTACCCACGGCAA-3′ 154 base pairs [Mg2+] = 3.5mM
5′-CAGTGGACTCCACAACATAC-3′ Annealing temperature = 60°C
Collagen Type I 5′-TGGTTCTCCTGGCAAAGAT-3′ 232 base pairs [Mg2+] = 3.5mM
5′-ATCACCGGGTTCACCTTTA-3′ Annealing temperature = 60°C
Collagen Type III 5′-ACAGCAGCAAGCTATTGAT-3′ 156 base pairs [Mg2+] = 3.5mM
5′-GGACAGTCTAATTCTTGTTCGT-3′ Annealing temperature = 60°C
MMP2 5′-AGCTACTTCTTCAAGGGTG-3′ 150 base pairs [Mg2+] = 4.0mM
5′-GTGTGCAGAAGGCAATG-3′ Annealing temperature = 60°C
MMP3 5′-GGAGAGGCTGACATAAAGATT-3′ 161 base pairs [Mg2+] = 4.0mM
5′-GATGTATCGCTTGTCCATTG-3′ Annealing temperature = 60°C
MMP9 5′-TGCCTGAGACTGGAGAG-3′ 159 base pairs [Mg2+] = 4.0mM
5′-GCAAGTCTTCCGAGTAGTT-3′ Annealing temperature = 60°C
MMP13 5′-TACAACTTGTTCCTTGTCGC-3′ 166 base pairs [Mg2+] = 4.0mM
5′-CTGGGCCATAGAGAGACT-3′ Annealing temperature = 60°C
MMP14 5′-AAGCACTGGGTGTTTGAT-3′ 169 base pairs [Mg2+] = 4.0mM
5′-GTTCCTCGTTGAAACGGT-3′ Annealing temperature = 60°C
TIMP1 5′-CAGCGAGGAGTTTCTGG-3′ 157 base pairs [Mg2+] = 4.0mM
5′-GGTAAACACTGTGCACCC-3′ Annealing temperature = 60° C
TIMP2 5′-GAGGAAAGAAGG AGTATCTCATTG-3′ 195 base pairs [Mg2+]=4.0mM
5′-CCGGAGACGAGATATAGC-3′ Annealing temperature = 60° C