Table 3. Identification of SACMV-induced log2-fold differentially expressed Arabidopsis host genes (p<0.05) showing similarities to Tomato yellow leaf curl Sardinia virus (TYLCSV) virus in N. benthamiana (Lozano-Durán et al, 2011).

Arabidopsis Acc no.	SACMV-[ZA:99] Fold Change 14 dpi	SACMV-[ZA:99] Fold Change 24 dpi	SACMV-[ZA:99] Fold Change 36 dpi	Identity	Function	Selection criteria for TYLCV
				Group A: no detected infection effects
AT2G02560		−1.47		Cullin-associated and neddylation-dissociated (CAND1)	Protein metabolism	TrAP/C2 interaction
AT1G67630		−1.5		DNA polymerase alpha 2 (POLA2)	DNA metabolism	Cellular process
AT5G22220		1.19		E2F transcription factor 1 (E2FB)	Transcription	Cellular process
AT1G21920	1.61	2.38	1.66	Histone 3 K4-specific methyltransferase SET7/9	Unknown	TrAP/C2 interaction
AT3G44110		−1.19		Homologue to co-chaperone DNAJ-like protein (ATJ3)	Protein folding	C3 interaction
AT3G25560	−1.31			NSP interacting kinase 2 (NIK2)	Signal transduction	Phloem over-expression
AT5G03150		−1.47		Putative nucleic acid binding/transcription factor (JDK)	Unknown	TrAP/C2 interaction
AT1G01720		−2.16		Putative transcriptional activators with NAC domain (ATAF1)	Transcription	C3 interaction
AT4G17230	−1.56	−2.41		Scarecrow-like protein (SCL13)	Transcription	Phloem over-expression
AT5G50580		1.24		SUMO activating enzyme (SAE1B)	Protein metabolism	Cellular process
AT4G24440	1.35	1.26		Transcription factor IIA gamma chain (TFIIA-S)	Transcription	Phloem over-expression
AT1G19660	−1.41	1.15		Wound inducive gene (F14P1.1)	Stress	C4 interaction
				Group B: early infection promoted
AT1G09270			−1.41	Importin alpha isoform 4 (IMPA-4)	Transport	CP interaction
AT1G15380		1.66		Lactoylglutathione lyase (GLO1)	Stress	C3 Interaction
AT1G47128	1.2	1.55		Dehydration responsive 21 (RD21)	Stress	V2 interaction
AT5G22000	−1.21			RING-type E3 ubiquitin ligase (RHF2A)	Protein modification	Transactived by TrAP/C2
AT2G30110	−1.21			Ubiquitin activating enzyme (UBA1)	Protein modification	TrAP/C2 Interaction
				Group C: infection delayed, reduced or prevented
AT1G51680	1.21	1.4	−2.5	4-coumarate:CoA ligase (AT4CL1)	Metabolism	Phloem over-expression
AT3G25760	1.28	−1.9	−3.05	Allene oxide cyclase (AOC1)	Metabolism	Phloem over-expression
AT5G61430	1.36	1.61		Geminivirus Rep A-binding (GRAB2)	Transcription	Rep interaction
AT2G26560	1.61			Patatin-like protein 2 (PLP2)	Stress	Phloem over-expression
AT1G09840		−1.16		Shaggy-related kinase kappa (SK4-1/SKK)	Protein modification	C4 interaction
AT5G08590		1.19		SKP1-like 2 (ASK2)	Protein modification	Transactived by TrAP/C2