Table 5. Analysis results of recombination break points in recombinant viruses.
| Samples |
RDP
|
Genconv
|
Bootscan
|
MaxChi
|
Chimaera
|
3Seq
|
Classification of recombination | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| break point | P-value | break point | P-value | break point | P-value | break point | P-value | break point | P-value | break point | P-value | ||
| KA08-3505 | 547a | 1.746X10-12 | 547 | 3.405X10-13 | 664 | 4.481X10-14 | 547 | 6.250X10-11 | 547 | 1.483X10-12 | 547 | 2.220X10-16 | Intraspecies recombination of HRV-A |
| KA08-4418 | 552 | 1.016X10-28 | 552 | 3.904X10-27 | 552 | 3.398X10-29 | 552 | 5.081X10-18 | 552 | 1.334X10-17 | 552 | 9.208X10-35 | |
| KA09-446 | 506 | 6.793X10-13 | 508 | 4.366X10-11 | 606 | 2.668X10-13 | 506 | 4.664X10-12 | 506 | 1.724X10-12 | 506 | 1.224X10-14 | |
| KA09-560 | 534 | 7.549X10-15 | 519 | 1.330X10-13 | 534 | 2.177X10-14 | 534 | 4.617X10-14 | 534 | 2.416X10-15 | 519 | 1.994X10-23 | |
| KA09-822 | 490 | 5.139X10-18 | 490 | 2.442X10-17 | 498 | 8.780X10-18 | 490 | 2.442X10-14 | 490 | 2.333X10-13 | 490 | 5.371X10-24 | |
| KA08-3539 | 566 | 1.701X10-23 | 516 | 1.216X10-22 | 516 | 2.547X10-24 | 566 | 4.391X10-20 | 516 | 1.880X10-21 | 516 | 5.423X10-39 | Interspecies recombination of HRV-A |
| KA08-4374 | 522 | 5.315X10-26 | 522 | 1.317X10-22 | 522 | 7.161X10-23 | 534 | 2.339X10-19 | 526 | 1.461X10-21 | 526 | 1.923X10-46 | |
| KA09-864 | 507 | 1.614X10-20 | 516 | 2.666X10-20 | 516 | 3.225X10-21 | 516 | 2.470X10-15 | 516 | 1.568X10-18 | 507 | 1.641X10-32 | |
| KA08-4189 | 515 | 1.212X10-25 | 515 | 6.197X10-25 | 515 | 1.574X10-20 | 549 | 8.018X10-21 | 515 | 1.039X10-22 | 515 | 1.451X10-46 | Intraspecies recombination of HRV-C |
| KA09-101 | undetermind | undetermind | 519 | 1.010X10-26 | 519 | 3.573X10-26 | 519 | 2.994X10-22 | 519 | 4.491X10-22 | 519 | 2.313X10-60 | |
| KA09-756 | 528 | 3.465X10-22 | 528 | 1.170X10-21 | 506 | 9.908X10-19 | 550 | 7.378X10-21 | 550 | 4.684X10-22 | 528 | 1.995X10-39 | |
| KA09-893 | 452 | 1.243X10-16 | 508 | 1.896X10-17 | 508 | 7.852X10-19 | 508 | 8.768X10-13 | 508 | 7.926X10-15 | 508 | 2.160X10-18 | |
| KA08-4010 | 491 | 2.038X10-21 | 484 | 3.907X10-22 | 491 | 6.837X10-22 | 491 | 2.019X10-17 | 491 | 5.843X10-18 | 484 | 4.683X10-32 | Interspecies recombination of HRV-C |
| KA08-4631 | 519 | 2.001X10-31 | 519 | 1.995X10-28 | 519 | 1.546X10-33 | 519 | 5.949X10-23 | 519 | 1.111X10-22 | 519 | 7.058X10-50 | |
| KA09-218 | undetermind | undetermind | 538 | 1.590X10-30 | 538 | 1.318X10-34 | 538 | 1.032X10-23 | 538 | 5.459X10-24 | 538 | 1.572X10-59 | |
| KA09-495 | 550 | 9.932X10-27 | 550 | 3.055X10-27 | 563 | 1.810x10-26 | 550 | 2.229X10-18 | 550 | 2. 837X10-20 | 553 | 4.557X10-40 | |
| KA09-806 | 554 | 2.175X10-26 | 554 | 9.415X10-31 | 554 | 5.104X10-33 | 554 | 1.246X10-22 | 588 | 1.314X10-21 | 554 | 7.437X10-32 | |
| KA09-917 | undetermind | undetermind | 472 | 3.654X10-15 | 472 | 6.307X10-18 | 515 | 3.314X10-14 | 515 | 9.148X10-14 | 472 | 1.178X10-20 | |
| KL0809-374 | 517 | 7.58510-16 | 517 | 9.589X10-13 | 517 | 8.460X10-15 | 517 | 1.822X10-17 | 517 | 4.989X10-19 | 517 | 2.532X10-42 | |
Results are shown for all recombination events with 6 analysis methods by RDP program.
a : Position referred by GenBank accession no. FJ445187