Table 1.
Reprever analysis on NA18507 data given three independent gain calls and one negative call
| Call set (size) | n.accepted (rate) | n.breakpoint |
|---|---|---|
| Each call set | ||
| CNVer (1876) | 1103 (58.8%) | 3993 |
| Yoona (85) | 54 (63.5%) | 168 |
| Conrad (206) | 67 (32.5%) | 173 |
| Random (1000) | 39 (3.9%) | 77 |
| Overlapping call setb | ||
| CNVer + Yoon (27) | 22 (81.5%) | 63 |
| CNVer + Conrad (96) | 55 (57.3%) | 194 |
| Yoon + CNVer (16) | 9 (56.3%) | 30 |
| Yoon + Conrad (3) | 3 (100.0%) | 11 |
| Conrad + CNVer (9) | 8 (88.9%) | 9 |
| Conrad + Yoon (2) | 2 (100.0%) | 2 |
| CNVer + Yoon + Conrad (2) | 2 (100.0%) | 4 |
| CNVer*Yoon (12) | 10 (83.3%) | 13 |
| CNVer*Conrad (9) | 8 (88.9%) | 24 |
| Yoon*Conrad (2) | 2 (100.0%) | 3 |
For each call set, Reprever
scans potential insertion breakpoints of the given regions.
n.accepted, number of regions that have at least one matching breakpoint; n.breakpoint, number of total breakpoints.
aThis call set was targeted only to Chr 1.
bWe define an overlapping call set 
as the subset of call set A, which takes every region 
in the condition of existence of a region 
, which overlaps at least 50% of rA. Overlapping call set 
is similarly defined but contains regions where the overlap is satisfied reciprocally. In other words, at least 50% of rB is also in rA, and vice-versa.