Table 2.
Predicted breakpoints in gene region
| Breakpoint | Region | Gene | Score | CNV source |
|---|---|---|---|---|
| chr1:16766464 | Intron | NBPF1 | 62.07 | CNVer |
| chr1:16775357 | CDS | NBPF1 | 33.02 | CNVer |
| chr1:16778388 | CDS | NBPF1 | 100.07 | CNVer |
| chr1:16784684 | CDS | NBPF1 | 37.8 | CNVer |
| chr1:16792907 | Intron | NBPF1 | 105.0 | CNVer |
| chr1:21665540 | Intron | NBPF3 | 38.91 | CNVer |
| chr1:143665870 | Intron | PDE4DIP | 39.2 | CNVer |
| chr1:143989906 | Intron | NOTCH2NL | 25.3 | CNVer |
| chr1:144008986 | CDS | NBPF10 | 43.25 | CNVer |
| chr1:144011688 | Intron | NBPF10 | 24.3 | CNVer |
| chr1:144013697 | Intron | NBPF10 | 27.01 | CNVer |
| chr1:147009280 | CDS | NBPF16 | 22.42 | CNVer |
| chr1:147965460 | Intron | LOC729130 | 30.57 | CNVer |
| chr2:91467172 | Intron | LOC389000 | 21.46 | CNVer |
| chr2:95963046 | Intron | LOC400986 | 37.5 | CNVer |
| chr2:95965655 | Intron | LOC400986 | 95.25 | CNVer |
| chr2:95967599 | Intron | LOC400986 | 117.56 | CNVer |
| chr3:197148075 | CDS | LOC727978 | 26.93 | CNVer |
| chr3:197149586 | Intron | LOC727978 | 37.05 | CNVer |
| chr3:197150946 | Intron | LOC727978 | 24.0 | CNVer |
| chr4:191100462 | Intron | FRG1 | 21.48 | CNVer |
| chr4:191105726 | Intron | FRG1 | 33.2 | CNVer |
| chr5:98898838 | Intron | LOC728104 | 29.67 | CNVer |
| chr6:24791875 | Intron | ACOT13 | 31.0 | Conrad |
| chr9:66729560 | Intron | LOC653458 | 38.62 | CNVer |
| chr11:89298719 | Intron | LOC729384 | 28.56 | Conrad |
| chr12:69819920 | Intron | TSPAN8 | 89.0 | Conrad |
| chr15:26137336 | CDS | HERC2 | 25.98 | CNVer |
| chr16:33492794 | Intron | LOC401847 | 31.81 | CNVer |
| chr22:18976441 | Intron | LOC729461 | 31.7 | CNVer |
Top 30 scored breakpoints are listed here. The entire list including intergenic regions is available in Supplementary Table S3.
CDS, coding DNA sequence.