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. 2013 Apr 26;41(12):6273–6285. doi: 10.1093/nar/gkt319

Table 2.

TPR for known final and known transient structural features as predicted by Kinwalker, Kinéfold and RNAKinetics using the respective MCC-derived cutoff

Program TPR
Known transient Known final
Kinwalker 0.428 0.762
Kinéfold 0.183 0.586
RNAKinetics 0.722 0.652

TPR is a measurement of sensitivity on base-pair level, and is defined as Inline graphic. The program-specific MCC-derived cutoffs are applied to filter the predictions (see Figure 2 for details).