Table 1.
Pathway classification performance statistics for simulated metagenomes Sim1 and Sim2 at progressively larger sequence coverage
| Sample | Gm | Precision | Sensitivity | Specificity | Accuracy | F-measure | Matthews |
|---|---|---|---|---|---|---|---|
| Sim1 |
(1/32) |
0.96 |
0.31 |
0.99 |
0.73 |
0.47 |
0.79 |
| Sim1 |
(1/16) |
0.70 |
0.38 |
0.98 |
0.75 |
0.53 |
0.73 |
| Sim1 |
(1/8) |
0.76 |
0.57 |
0.98 |
0.82 |
0.71 |
0.81 |
| Sim1 |
(1/4) |
0.85 |
0.69 |
0.97 |
0.86 |
0.80 |
0.83 |
| Sim1 |
(1/2) |
0.81 |
0.80 |
0.98 |
0.91 |
0.87 |
0.88 |
| Sim1 |
(1/1) |
0.84 |
0.89 |
0.97 |
0.94 |
0.92 |
0.91 |
| Sim2 |
(1/32) |
0.93 |
0.25 |
0.99 |
0.70 |
0.40 |
0.74 |
| Sim2 |
(1/16) |
0.95 |
0.36 |
0.99 |
0.75 |
0.53 |
0.78 |
| Sim2 |
(1/8) |
0.93 |
0.49 |
0.98 |
0.79 |
0.64 |
0.78 |
| Sim2 |
(1/4) |
0.95 |
0.62 |
0.98 |
0.84 |
0.75 |
0.83 |
| Sim2 |
(1/2) |
0.97 |
0.70 |
0.98 |
0.88 |
0.81 |
0.87 |
| Sim2 | (1/1) | 0.95 | 0.81 | 0.97 | 0.91 | 0.87 | 0.87 |