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. 2013 Jun 28;8(6):e67372. doi: 10.1371/journal.pone.0067372

Table 3. COI-16S dataset: AMOVA.

Source of variation d.f. SSD Var. comp. % var Fixation indices P-value
A - Group 1 (BMC, OSM, MOL, CCE, SAL, OTT, ORI, MAR, CPA, MAD, IPI, CPC, ELB, SVC, MON, MLZ, PAC, OGN, VEN); Group 2 (EP, AG, XI)
Among groups 1 52.953 1.221 39.61 0.396 <0.001
Among populations within groups 20 104.776 0.370 12.00 0.199 <0.001
Within populations 201 299.754 1.491 48.38 0.516 <0.001
B - Group 1 (BMC, OSM, MOL, CCE, SAL, OTT, ORI, MAR, CPA, MAD, IPI, CPC, SVC, MON, MLZ, PAC, OGN, ELB); Group 2 (EP, AG, XI); Group 3 (VEN)
Among groups 2 80.326 0.971 35.56 0.356 <0.001
Among populations within groups 19 77.403 0.268 9.80 0.152 <0.001
Within populations 201 299.754 1.491 54.64 0.454 <0.001
C - Group 1,western Mediterranean (BMC, OSM, MOL, CCE, SAL, OTT, ORI, MAR, CPA, MAD, IPI, CPC, SVC, MON, MLZ, ELB); Group 2, eastern Mediterranean (PAC, OGN, VEN, EP, AG, XI)
Among groups 1 17.491 0.096 4.48 0.045 >0.05
Among populations within groups 20 140.238 0.558 26 0.272 <0.001
Within populations 201 299.754 1.491 69.62 0.305 <0.001
D - Group 1, western Mediterranean (BMC, OSM, MOL, CCE, SAL, OTT, ORI, MAR, CPA, MAD, IPI, CPC, SVC, MON, MLZ, ELB); Group 2, eastern Mediterranean, (PAC, OGN, EP, AG, XI); Group 3, Adriatic Sea (VEN)
Among groups 1 53.206 0.376 16.44 0.164 <0.01
Among populations within groups 19 104.524 0.421 18.39 0.220 <0.001
Within populations 201 299.574 1.491 65.17 0.348 <0.001

Results of the analysis of molecular variance (AMOVA). Groups were defined a posteriori (A, B) according to the geographic trend emerged from pairwise ΦST values, or a priori (C, D) according to biogeographic criteria. d.f.: degrees of freedom; SSD: sum of squared deviations; var. comp.: variance component; % var: percentage of variation.