Skip to main content
. 2013 Jun 28;8(6):e67159. doi: 10.1371/journal.pone.0067159

Table 3. Average game centrality (GC) values for E. coli methionyl-tRNA synthetase amino acids.

Average Game Centrality (GC) of substrate-free proteina Average Game Centrality (GC) of substrate-bound protein Game Centrality (GC) decrease
Catalytic domainb 0.69 0.60 0.09
Rossmann-fold-1(active centre) 0.73 0.56 0.17
Rossmann-fold-2 0.68 0.62 0.06
Stem contact fold (KSMKS) 0.65 0.61 0.04
Connecting peptide (CP) domain 0.50 0.36 0.14
tRNA anticodon-binding domain 0.63 0.41 0.22
Signaling amino acids [39] 0.79 0.73 0.06
Complete Met-tRNA-synthetase 0.62 0.47 0.15
a

Protein structure network of E coli methionyl-tRNA-synthetase was constructed, Prisoner’s dilemma game was simulated, and game centrality measures were calculated as described in Methods.

b

Domains from top to bottom: the catalytic domain including the Rossmann-fold-1 (catalytic function), Rossmann-fold-2 and stem contact fold (KMSKS) sub-domains; the connecting peptide (CP) domain; the anticodon binding, carboxy-terminal domain, 43 signaling amino acids involved in the transmission of conformational change as shown by Ghosh and Vishveshwara [46], whole methionyl-tRNA synthetase.