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Phylogenetic tree illustrating the major lineages (phyla) of the domain Bacteria analyzed with AMPHORA2 and 29 protein phylogenetic markers. The TM6 gene sequences were aligned against the AMPHORA2 seed alignment consisting of sequences from over 1,000 genomes through HMM. Tree branch lengths ≤0.4 were collapsed. For the original tree, see SI Appendix, Fig. S9.
