Table 3.

Region-specific DNA capture and sequencing performance

Cancer Designation	1	2	3	4	5	Biphasic Cancer: Low Grade Region	Biphasic Cancer: High Grade Region
Pass-Filter Read Pairs	1751408	1552882	2834330	2059979	3459801	16908123	26247753
Total reads aligned	3391847	2995682	5468661	3970439	6567690	32671738	50742320
% of reads aligned	96.8	96.5	96.5	96.4	94.9	96.70%	96.70%
% of Bases on/near targets*	83.1%	79.9%	80.3%	82.9%	71.4%	85.20%	85.10%
Average target coverage	209	177	318	243	331	1758	2680
% Usable bases on target	47.9%	46.0%	45.3%	47.6%	39.3%	46.90%	45.80%
Fold enrichment	2379	2276	2247	2371	1967	2360	2316
% zero-coverage targets	1.0%	1.1%	0.8%	1.1%	0.9%	0.80%	0.80%
% of target bases with >=2x coverage	99.3%	99.3%	99.1%	99.2%	99.5%	99.50%	99.50%
% of target bases with >=10x coverage	98.3%	98.5%	98.4%	98.5%	98.9%	99.10%	99.30%
% of target bases with >=20x coverage	97.6%	97.5%	97.9%	97.7%	98.4%	98.80%	99.00%
% of target bases with >=30x coverage	96.6%	96.4%	97.5%	96.7%	98.0%	98.60%	98.80%

^*Total target length = 546,336 bases; total bait length = 814,497 bases