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. Author manuscript; available in PMC: 2013 Jul 1.
Published in final edited form as: Mod Pathol. 2012 Aug 10;25(12):1599–1608. doi: 10.1038/modpathol.2012.121

Table 5.

Resolution of discordant variant calls between Sanger Sequencing of fresh frozen cancers and Illumina sequencing of matching FFPE cancer.

Cancer Designation Gene Name Chr:Position Ref. Var FFPE Cancer Normal Status [SNP, Mutant, or No Variant] Notes
1 NAV3 Chr12_77117387 G A No No No No Variant
2 PTPRU chr1:29491107 C T Yes Yes No Mutant Called by SOAPsnp and UGT but not Atlas-SNP2
2 PLCG2 Chr16_80460330 C T No No No No variant
3 SCN3B Chr11_123018543 T A No No No No Variant