Table 1.
Gene loci in the genome of Paracoccus denitrificans PD1222 attributed to desulfonation and desulfination pathways (see the text)
| Pathway | Locus tag | Orientationa | Annotation |
|---|---|---|---|
| Taurine | Pden_1640 | ← | Phosphate acetyltransferase (Pta1) |
| Pden_1641 | ← | Sulfite exporter (TauZ) | |
| Pden_1642 | ← | Sulfoacetaldehyde acetyltransferase (Xsc1) | |
| Pden_1643 | ← | Taurine dehydrogenase (Tdh), large subunit (TauX) | |
| Pden_1644 | ← | Taurine dehydrogenase (Tdh), small subunit (TauY) | |
| Pden_1645 | ← | Taurine transporter (TRAP type), large permease component (TauM) | |
| Pden_1646 | ← | Taurine transporter (TRAP type), small permease component (TauL) | |
| Pden_1647 | ← | Taurine transporter (TRAP type), periplasmic binding protein (TauK) | |
| Pden_1648 | → | Transcriptional regulator (GntR family) (TauR) | |
| Sulfoacetate | Pden_1008 | ← | Phosphate acetyltransferase (Pta3) |
| Pden_1009 | ← | Sulfite exporter (SauZ) | |
| Pden_1010 | ← | Sulfoacetaldehyde acetyltransferase (Xsc3) | |
| Pden_1011 | ← | Sulfoacetate transporter (major facilitator superfamily 1) (SauU) | |
| Pden_1012 | ← | Sulfoacetate-CoA ligase (SauT) | |
| Pden_1013 | ← | Sulfoacetaldehyde dehydrogenase (acylating) (SauS) | |
| Pden_1014 | → | Transcriptional regulator (LacI family) | |
| Isethionate | Pden_4275 | ← | Phosphate acetyltransferase (Pta2) |
| Pden_4276 | ← | Sulfite exporter (IseZ) | |
| Pden_4277 | ← | Sulfoacetaldehyde acetyltransferase (Xsc2) | |
| Pden_4278 | ← | Isethionate dehydrogenase (IseJ) | |
| Pden_4279 | ← | Isethionate transporter (major facilitator superfamily 1) (IseT) | |
| Pden_4280 | → | Transcriptional regulator (IcIR family) | |
| HT (deamination) | Pden_4273 | → | HT:pyruvate/taurine:pyruvate aminotransferase (Hpa/Tpa) |
| Pden_4274 | → | Transcriptional regulator (GntR family) | |
| HT (pyruvate regeneration) | Pden_1729 | ← | Alanine dehydrogenase |
| Unknown | Transcriptional regulator | ||
| HT (acetaldehyde oxidation) | Pden_2365 | → | Transcriptional regulator (Fis family) |
| Pden_2366 | → | Acetaldehyde dehydrogenase | |
| Pden_2367 | → | Alcohol dehydrogenase |
a
Carried on the forward (→) or reverse (←) strand of chromosome 1 (locus tags Pden_0001 to Pden_2832) or chromosome 2 (locus tags Pden_2833 to Pden_4514) of P. denitrificans PD1222.