Table 2.
Summary of variables used in the model
| Variable | Description |
|---|---|
| Fundamental geometrical entities | |
| ri | Radius of annular region i |
| li | Arc length of annular region i |
| P | Point on which the annuli are centered |
| Derived geometrical variables | |
| hi | Height contributed by annular region i |
| di | Distance of annular region i from tip |
| si | Arc length from P to annular region i |
| Ai | Surface area of one face of annular region i |
| Protein densities | |
| Ei | Exocyst density in annular region i |
| Si | Synthase density in annular region i |
| Parameters | |
| σ | Standard deviation of Gaussian distribution for E |
| ε | Parameter linking exocyst density to rate of synthase exocytosis |
| γ | Parameter linking synthase density to rate of surface area growth |
| sendo | Arc length from tip at which endocytosis starts (model using equation 3b) |
| ϕ | Fraction of synthase that undergoes endocytosis during one time step (model using equation 3b) |
| δt | Time step for updating the variables; acts simply to scale ε, γ, and ϕ and is therefore implicitly set to 1 in calculations |