Table 1.
Summary Statistics of Sequence Diversity in Africans, Europeans, and East Asians.
| Africans | Europeans | East Asians | |||||||||||||
| Genes (length of sequences) | S (Spop)a | πb | TDc | FLDd | FLFe | S (Spop) | π | TD | FLD | FLF | S (Spop) | π | TD | FLD | FLF |
| NOD2 (3,016 bp) | |||||||||||||||
| Exon 4 (1,021 bp) | 4 (2) | 0.390 | −0.585 | 0.842 | 0.429 | 4 (2) | 0.880 | 0.849 | 0.820 | 0.996 | 1 (0) | 0.022 | 0.291 | 0.457 | 0.477 |
| Intron 7 to exon 9 (1,642 bp) | 9 (4) | 0.580 | −0.665 | 1.231 | 0.644 | 11 (8) | 0.720 | −0.589 | −2.770** | −2.354* | 4 (1) | 0.290 | −0.548 | 0.893 | 0.492 |
| Intron 10 to intron 11 (353 bp) | 0 (0) | N.A.f | N.A. | N.A. | N.A. | 1 (1)g | 0.004 | 0.791 | 0.415 | 0.036 | 0 (0) | N.A. | N.A. | N.A. | N.A. |
| 10q21 (513 bp) | 4 (4) | 0.130 | −1.456* | −0.525 | −1.006 | 2 (2) | 0.050 | −1.089 | −1.407 | −1.557 | 1 (1) | 0.040 | −0.897 | 0.456 | 0.046 |
| IL23R (640 bp) | 4 (1) | 0.390 | −0.984 | −0.524 | −0.813 | 3 (0) | 0.520 | −0.354 | 0.713 | 0.426 | 0 (0) | N.A. | N.A. | N.A. | N.A. |
Total number of segregating sites (that of segregating sites specific to a population).
Nucleotide diversity in a population (×10−3).
TD, Tajima's D.
FLD, Fu and Li's D.
FLF, Fu and Li's F.
N.A. means that summary statistics were not calculated because there was no polymorphism in a population.
The CD allele (frameshift mutation; SNP#35) specific to Europeans is not included in this analysis.
*P < 0.05, **P < 0.01: the significance of observed values estimated by coalescent simulation (1,000) assuming constant population size.