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. 2012 Jan 12;29(6):1569–1585. doi: 10.1093/molbev/mss006

Table 1.

Summary Statistics of Sequence Diversity in Africans, Europeans, and East Asians.

Africans Europeans East Asians
Genes (length of sequences) S (Spop)a πb TDc FLDd FLFe S (Spop) π TD FLD FLF S (Spop) π TD FLD FLF
NOD2 (3,016 bp)
    Exon 4 (1,021 bp) 4 (2) 0.390 −0.585 0.842 0.429 4 (2) 0.880 0.849 0.820 0.996 1 (0) 0.022 0.291 0.457 0.477
    Intron 7 to exon 9 (1,642 bp) 9 (4) 0.580 −0.665 1.231 0.644 11 (8) 0.720 −0.589 −2.770** −2.354* 4 (1) 0.290 −0.548 0.893 0.492
    Intron 10 to intron 11 (353 bp) 0 (0) N.A.f N.A. N.A. N.A. 1 (1)g 0.004 0.791 0.415 0.036 0 (0) N.A. N.A. N.A. N.A.
10q21 (513 bp) 4 (4) 0.130 −1.456* −0.525 −1.006 2 (2) 0.050 −1.089 −1.407 −1.557 1 (1) 0.040 −0.897 0.456 0.046
IL23R (640 bp) 4 (1) 0.390 −0.984 −0.524 −0.813 3 (0) 0.520 −0.354 0.713 0.426 0 (0) N.A. N.A. N.A. N.A.
a

Total number of segregating sites (that of segregating sites specific to a population).

b

Nucleotide diversity in a population (×10−3).

c

TD, Tajima's D.

d

FLD, Fu and Li's D.

e

FLF, Fu and Li's F.

f

N.A. means that summary statistics were not calculated because there was no polymorphism in a population.

g

The CD allele (frameshift mutation; SNP#35) specific to Europeans is not included in this analysis.

*P < 0.05, **P < 0.01: the significance of observed values estimated by coalescent simulation (1,000) assuming constant population size.