Table 2.
Small indels in the clone CHA genome compared to the PAO1 genome
| Indel-pos.a | Change | Locus_tag | Annotation | Indel known |
|---|---|---|---|---|
| 288750 |
-AT |
PA0257 |
put. integrase/transposase, first ORF of RGP2 |
no |
| 740420 |
+C |
PA0683 |
HxcY, type II secretion system protein |
yes1 |
| 995238 |
+T |
PA0912 |
Hypothetical protein |
yes1 |
| 1060785 |
+T |
PA0977 |
Hypothetical, phage-like, first ORF in RGP7 |
no |
| 1116214 |
+C |
PA1029 |
Hypothetical protein, homology to antitoxin |
yes1 |
| 1697856 |
+G |
PA1559 |
Hypothetical, part of PmrA regulated operon |
yes2 |
| 1835046 |
+C |
PA1685 |
MasA, enolase-phosphatase E-1, part of methionine salvage pathway |
yes2 |
| 2301796 |
-GGC |
PA2091 |
Hypothetical protein |
yes3 |
| 2355772 |
+G |
PA2139 |
Hypothetical protein |
yes2 |
| 2356683 |
-C |
PA2141 |
Hypothetical protein |
yes2 |
| 2533912 |
+GTC |
PA2302 |
AmbE, non-ribosomal peptide synthetase |
yes3 |
| 2753523 |
+C |
PA2452 |
Similar to enterobactin esterase |
yes2 |
| 3083197 |
+G |
PA2727 |
Similar DNA helicase |
yes2 |
| 3506327 |
-C |
PA3124 |
Transcriptional regulator; deletion in last codon |
no |
| 3873151 |
-CCC |
PA3462 |
Sensor kinase of two-component system |
yes1 |
| 4657418 |
-A |
PA4161 |
FepG, ferric enterobactin transport protein; last codon, no change of coding sequence |
yes4 |
| 4888195 |
+G |
PA4360 |
Hypothetical, chromosome segregation protein, SMC-like; disruption of start codon |
yes5 |
| 5515497 |
-A |
PA4915 |
Chemotaxis transducer |
no |
| 5945963 | +C | PA5282 | Major facilitator transporter | no |
a: position according to PAO1 reference sequence NC_002516.
Indel is listed in the Pseudomonas Genome Database for completely sequenced P. aeruginosa genomes: 1for strains PA14, 2192, C3719, PACS2, 39016; 2for strains PA14, 2192, C3719, PACS2, 39016, PA7; 3for strains 2192, C3719, PACS2; 4for strains PA14, PACS2, 39016; 5for strains PA14, 2192, C3719, PA7, 39016.