Table 3.
SNPs causing gain or loss of start and stop codons in P. aeruginosa clone CHA genomes
| Locus_tag | SNP-pos.a | SNP | Pos. in aa-seq. | Length of aa-seq. | Annotation |
|---|---|---|---|---|---|
|
Clone CHA [CHA, PT22 and 491] common SNPs – stop codons gained: | |||||
| PA0089 |
325546 |
C-T |
308 |
321 |
Transcriptional activator GpuR |
| PA1261 |
1369435 |
G-A |
220 |
225 |
Probable transcriptional regulator |
| PA1427 |
1553550 |
G-T |
147 |
188 |
Hypothetical protein |
| PA2691 |
3045894 |
G-A |
87 |
402 |
Conserved hypothetical protein |
| PA4482 |
5013957 |
C-A |
96 |
97 |
Glu-tRNA(Gln) amidotransferase subunit C |
| PA4982 |
5598104 |
G-A |
58 |
999 |
Probable two-component sensor |
| PA5342 |
6010696 |
C-T |
121 |
267 |
Probable transcriptional regulator |
| PA5353 |
6020049 |
G-A |
356 |
409 |
Glycolate oxidase subunit GlcF |
|
Clone CHA [CHA, PT22 and 491] common SNPs - stop codons lost: | |||||
| PA2456 |
2756650 |
A-G |
114 |
114 |
Hypothetical protein |
| PA2566 |
2900372 |
T-G |
396 |
396 |
Conserved hypothetical protein |
| PA6439 |
5206722 |
A-G |
96 |
96 |
Hypothetical protein |
|
Clone CHA [CHA, PT22 and 491] common SNPs - start codons lost: | |||||
| PA0819 |
895825 |
T-C |
1 |
98 |
Hypothetical protein |
| PA2778 |
3136962 |
A-G |
1 |
292 |
Hypothetical protein |
| PA5525 |
6218101 |
T-C |
1 |
247 |
Probable transcriptional regulator |
|
Divergent nucleotide exchange – stop codon gained: | |||||
| PA0977 |
1060555 |
A-C/T |
93 |
108 |
Hypothetical protein |
| |
|
A-C in strains PT22 and 491, A-T in strain CHA |
|||
|
Strain-specific SNPs in strain CHA only - stop codons gained: | |||||
| PA0734 |
802084 |
C-T |
52 |
91 |
Hypothetical protein |
| PA5487 | 6178179 | T-A | 625 | 672 | Hypothetical protein |
a: position according to PAO1 reference sequence NC_002516.