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. 2013 May 11;14:324. doi: 10.1186/1471-2164-14-324

Table 2.

Results for S. cerevisiae

A) S. cerevisiae Biological Process
 
Degree
Betweenness
Transitivity
Hubscore
Closeness
GRN/PPN
32/1265
0/1265
2/1265
0/1265
0/1265
TRN/PPN
0/1057
0/1057
0/1057
0/1057
0/1057
GRN/TRN
1/1044
0/1044
1/1044
0/1044
0/1044
B)S. cerevisiae Cellular Component
GRN/PPN
4/295
0/295
7/295
5/295
0/295
TRN/PPN
0/245
0/245
0/245
0/245
0/245
GRN/TRN
0/241
0/241
0/241
0/241
0/241
C)S. cerevisiae Molecular Function
GRN/PPN
0/375
0/375
5/375
3/375
0/375
TRN/PPN
2/308
0/308
0/308
0/308
0/308
GRN/TRN
0/304
0/304
0/304
0/304
0/304
D)S. cerevisiae transitivity centrality GRN/PPN (Cellular Component)
GO
Term
Size
ρ
pfdr
 
GO:0031597
Cytosolic proteasome complex
202
0.30
0.002024
 
GO:0005875
Microtubule associated complex
560
0.16
0.009816
 
GO:0019005
SCF ubiquitin ligase complex
26
0.65
0.01706
 
GO:0031903
Microbody membrane
17
0.74
0.02134
 
GO:0000785
Chromatin
522
0.15
0.02134
 
GO:0000313
Organellar ribosome
17
0.74
0.02134
 
GO:0005654 Nucleoplasm 12 0.81 0.03283  

Spearman’s rank correlation coefficient test for centrality measures between the GRN, TRN and PPN of Gene Ontology subnetworks for A Biological Process, B Cellular Component and C Molecular Function. A-C Tests are performed for degree, betweenness, transitivity (local clustering coefficient), hubscore and closeness centrality. Each column, shows the number of significant terms and the total number of terms tested. D shows 7 terms for cellular components with significant transitivity centrality between theS. cerevisiaeGRNand PPN.