Table 3.
S. cerevisiae GPEA analysis Biological Process for individual chromosomes
| S. cerevisiae GRN to PPN | |||||
|---|---|---|---|---|---|
|
GOID |
Term |
Size |
Edges1 |
Edges2 |
pval |
| GO:0009987 |
Cellular process |
629 |
389 |
1509 |
1.5e-123 |
| GO:0008152 |
Metabolic process |
497 |
252 |
1067 |
7.5e-35 |
| GO:0044237 |
Cellular metabolic process |
481 |
245 |
1038 |
2.25e-33 |
| GO:0044238 |
Primary metabolic process |
450 |
227 |
998 |
1.1e-28 |
| GO:0043170 |
Macromolecule metabolic process |
356 |
176 |
854 |
8.5e-20 |
| GO:0044260 |
Cellular macromolecule metabolic process |
349 |
173 |
842 |
1.15e-19 |
| GO:0006364 |
rRNA processing |
32 |
18 |
39 |
1.2e-13 |
| GO:0016072 |
rRNA metabolic process |
33 |
18 |
41 |
3.45e-13 |
| GO:0042254 |
Ribosome biogenesis |
44 |
21 |
56 |
5.5e-12 |
| GO:0022613 |
Ribonucleoprotein complex biogenesis |
53 |
23 |
64 |
1.05e-10 |
|
S. cerevisiae GRN to TRN | |||||
| GO:0009987 |
Cellular process |
620 |
200 |
241 |
2.25e-51 |
| GO:0008152 |
Metabolic process |
492 |
131 |
147 |
2.905e-10 |
| GO:0044237 |
Cellular metabolic process |
477 |
127 |
143 |
2.747e-09 |
| GO:0044238 |
Primary metabolic process |
446 |
122 |
134 |
1.235e-08 |
| GO:0043170 |
Macromolecule metabolic process |
356 |
92 |
104 |
0.00291 |
| GO:0044260 |
Cellular macromolecule metabolic process |
349 |
89 |
102 |
0.007955 |
|
S. cerevisiae TRN to PPN | |||||
| GO:0009987 |
Cellular process |
631 |
255 |
1220 |
6.5e-63 |
| GO:0008152 |
Metabolic process |
499 |
160 |
923 |
4.15e-12 |
| GO:0044237 |
Cellular metabolic process |
483 |
153 |
895 |
1.95e-10 |
| GO:0044238 |
Primary metabolic process |
452 |
143 |
855 |
8e-09 |
| GO:0044249 |
Cellular biosynthetic process |
252 |
84 |
351 |
4.3e-06 |
| GO:0080090 |
Regulation of primary metabolic process |
144 |
46 |
222 |
6.5e-06 |
| GO:0009058 |
Biosynthetic process |
257 |
85 |
355 |
7e-06 |
| GO:0031323 |
Regulation of cellular metabolic process |
142 |
45 |
216 |
9e-06 |
| GO:0010556 |
Regulation of macromolecule biosynthetic process |
117 |
36 |
167 |
1.35e-05 |
| GO:2000112 | Regulation of cellular macromolecule biosynthetic process | 117 | 36 | 167 | 1.35e-05 |
Shown are the top 10 common significant terms between the gene regulatory network (GRN), the transcription regulatory network (TRN) and the protein-protein network (PPN). For ranking of terms the corresponding p-values of common significant terms between two networks were averaged. For GRN to TRN comparison only 6 terms were commonly significant.