Table 2.
GSEA summary of pathways associated with genes down regulated upon IGFBP2 knockdown
| NAME | SIZE | NOM p-val | FDR q-val | FWER p-val |
|---|---|---|---|---|
| KEGG_CELL_CYCLE |
49 |
0 |
0 |
0 |
| KEGG_DNA_REPLICATION |
28 |
0 |
0 |
0 |
| KEGG_NUCLEOTIDE_EXCISION_REPAIR |
15 |
0 |
0 |
0 |
| KEGG_MISMATCH_REPAIR |
15 |
0 |
0 |
0 |
| KEGG_PATHOGENIC_ESCHERICHIA_COLI_INFECTION |
15 |
0 |
2.19E-04 |
0.001 |
| KEGG_HOMOLOGOUS_RECOMBINATION |
15 |
0 |
1.83E-04 |
0.001 |
| KEGG_PYRIMIDINE_METABOLISM |
21 |
0 |
1.56E-04 |
0.001 |
| KEGG_OXIDATIVE_PHOSPHORYLATION |
19 |
0 |
0.00635 |
0.039 |
| KEGG_PARKINSONS_DISEASE |
21 |
0 |
0.01229 |
0.082 |
| KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION |
17 |
0.006186 |
0.013514 |
0.098 |
| KEGG_SPLICEOSOME |
32 |
0.002012 |
0.01617 |
0.128 |
| KEGG_OOCYTE_MEIOSIS |
30 |
0 |
0.02404 |
0.199 |
| KEGG_P53_SIGNALING_PATHWAY |
26 |
0 |
0.027815 |
0.247 |
| KEGG_HUNTINGTONS_DISEASE |
30 |
0.004098 |
0.032137 |
0.3 |
| KEGG_WNT_SIGNALING_PATHWAY |
21 |
0.045726 |
0.138961 |
0.804 |
| KEGG_PURINE_METABOLISM |
26 |
0.047431 |
0.150692 |
0.844 |
| KEGG_GAP_JUNCTION |
17 |
0.15251 |
0.155502 |
0.877 |
| KEGG_TGF_BETA_SIGNALING_PATHWAY |
15 |
0.393214 |
0.318836 |
0.995 |
| KEGG_SMALL_CELL_LUNG_CANCER |
15 |
0.55144 |
0.400925 |
0.999 |
| KEGG_REGULATION_OF_ACTIN_CYTOSKELETON |
25 |
0.517578 |
0.687552 |
1 |
| KEGG_TIGHT_JUNCTION |
16 |
0.787018 |
0.687305 |
1 |
| KEGG_PATHWAYS_IN_CANCER |
52 |
0.229814 |
0.731651 |
1 |
| KEGG_ALZHEIMERS_DISEASE | 38 | 0.433663 | 0.706543 | 1 |
NOM P nominal P value.