Table 1.
Genomic Regions of Silurana tropicalis That Are Putatively Sex Linked Based on Linkage Study of Olmstead et al. (2010) and Sequencing of Chromosome Arm 7p by Seifertova et al. (submitted)
| AFLP | Recombination | v4 | v7.1 | 7p? | Portion Sex Linked |
|---|---|---|---|---|---|
| E33.M72.143 | 0 | 605:241571-241691 | 7:4966286-4966166 | Yes | 4435335-5175370 |
| E33.M81.275 | 0 | 494:27646-27898 | No hits | — | NA |
| E33.M90.327 | 0 | No hits | 211:76840-76535 | Yes | ALL |
| E38.M93.218 | 0 | 953:138210-138402 | 278:109297-109490 | No | ALL |
| No name | 0 | 494:31633-32115 | No hits | — | NA |
| No name | 0 | 494:27541-27902 | No hits | — | NA |
| No name | 0 | 379:817889-818000 | 2:149826489-149826600 | Yes | 149787496-150105127 |
| No name | 0 | 736:292586-293067 | 78:248343-247864 | Yes | ALL |
| No name | 0.3 | 605:245039-245621 | 7:4963243-4962661 | Yes | 4435335-5175370 |
| No name | 0 | 605:116800-117215 | 22:1040592-1040177 | Yes | ALL |
| E40.M52.572 | 0.4 | 859:57522-58049 | 7:3195527-3196069 | Yes | 76939-3370464 |
| E33.M61.177 | 0.5 | 1778:6156-6312; 1778:9971-9815 | 144:136541-136385 | Yes | ALL |
| E33.M61.177 | 0.5 | 1778:6156-6312; 1778:9971-9815 | 662:22621-22465 | No | NONE because 114 is on 7p |
| No name | 0.5 | 810:261995-262744 | 94:264236-264985 | Yes | ALL |
| No name | 0.5 | 810:261995-262744 | 94:263563-263460 | Yes | ALL |
| E32.M94.406 | 1.9 | Multiple hits | 22:58856-59241 | Yes | ALL |
| E37.M52.423 | 1.9 | 810:325559-325959 | 144:95531-95931 | Yes | ALL |
| E37.M52.423 | 1.9 | 1151:130316-130719 | 144:95931-95531 | Yes | ALL |
| E41.M83.506 | 1.9 | 810:276803-277288 | 94:279867-279382 | Yes | ALL |
| E32.M35.552 | 2.6 | Multiple hits | No hits | — | NA |
| E37.M60.232 | 2.6 | 6092: 2392-2601 | 7931:611-828 | Yes | ALL |
| E32.M59.335 | 2.9 | 735:292141-292443 | 7:7903155-7902853 | Yes | 6687308-9940823 |
Note.—NA, not applicable. AFLP refers to the name of the AFLP from Olmstead et al. (2010) if provided. Recombination refers to the recombination rate with the sex-determining locus from that study. Scaffold and position of AFLPs are provided for genome assembly version 4.0 (v4) and 7.1 (v7.1). Sex-linked portions that were included in categories in tables 2 and 3 based on the level of recombination (Portion sex linked, with NA meaning not applicable) either refer to base pair positions of a contig within a larger scaffold that is not interrupted by unknown sequence or the entire scaffold was assumed to be sex linked (ALL).