Table 3. Differentially expressed miRNAs between BmCPV-infected 72 h midgut and normal midgut of silkworm.

MiRNA	Sequence	Length	Transcripts per million		72t vs 72c
			72t	72c	P-Value	Ratio	Mark
bmo-miR-2843-2*	TTCGTGATCAAGCCTGACCCCTTAAT	26	2.12	0.14	0.000536	15.25	Up
bmo-miR-3203	ATGTCAGCTCAGTCAGTACACG	22	1.65	0.14	0.003177	11.86	Up
bmo-miR-3001	TAAGTTGAAAGAATTGTAGATTTTGA	26	24.54	51.94	0	0.47	Down
bmo-miR-2843	TCTAAGGAAATTAGGTCGGATACA	24	5.90	12.95	0.000343	0.46	Down
bmo-miR-307	TCACAACCTCCTTGAGTGAG	20	5.43	11.98	0.00054	0.45	Down
bmo-miR-2756	ACCCTGTAGCTGCCAAGGGGCG	22	10.62	28.69	0	0.37	Down
bmo-miR-274	GTTTGTGACCGTCACTAACGGGCAGT	26	4.48	13.51	0.000004	0.33	Down
bmo-miR-2778d*	CAGAGTACGCAAAAAACAATT	21	1.65	5.01	0.004688	0.33	Down
bmo-miR-9a	TCTTTGGTTATCTAGCTGTATGA	23	26.19	107.50	0	0.24	Down
bmo-miR-9a*	ATAAAGCTAGGTTACCGGAGTTA	23	0.94	3.90	0.003953	0.24	Down
bmo-bantam*	CTGGTTTTCATAATGATTTGACA	23	0.71	3.20	0.006951	0.22	Down
bmo-miR-2778c*	CAGAGTACGCAAAAAATCAATT	22	0.47	2.65	0.008874	0.18	Down
bmo-miR-2826	AAAAGATCGAGGATCCGATATTG	23	0.47	3.62	0.001029	0.13	Down
bmo-miR-14	TCAGTCTTTTTCTCTCTCCTA	21	508.28	1042.14	0	0.49	Down
bmo-miR-281*	AAGAGAGCTATCCGTCGACAGT	22	5430.83	10965.99	0	0.50	Down
miR-3351	TTACGTTGTAGATGCCTATG	20	0.94	3.76	0.005271	0.25	Down
Novel-46*	CCCGGGCAACCCGCTGAAACT	21	2.83	0.42	0.000585	6.78	Up
Novel-46	GAATCAGCATGTTCTCCCT	19	72.21	10.86	0	6.65	Up
Novel-11	GTTGTTGGGAAGTTGACC	18	179.10	29.38	0	6.10	Up
Novel-33	ATTTTCAGGAAGTTCACT	18	8.02	1.95	0.000001	4.12	Up
Novel-50	CGGTGTTTCGTTCCAAGCGTGCAGA	25	656.23	207.48	0	3.16	Up
Novel-41	TGATCAACGCAAAGTCGCCA	20	5.19	2.09	0.004895	2.49	Up
Novel-11*	GTGAGGTCTTCGGACCGACA	20	39.41	16.57	0	2.38	Up
Novel-10	TTCGGAACGCGAAGAGCACC	20	117.51	58.07	0	2.02	Up
Novel-7	CGTACGAGAGGAGGCATAGT	20	5.19	10.44	0.003261	0.50	Down
Novel-47*	ATCAGCGGTGGTCTGGGGTACC	22	29.50	62.38	0	0.47	Down
Novel-53	AGGATTGTGGGTGGTTCTGCC	21	11.80	26.46	0	0.45	Down
Novel-24	TTTCTCTCGGGCGTACGTTTAC	22	2792.93	7260.44	0	0.38	Down
Novel-28	CAATTCTCATTTCGGGCGTC	20	0.94	5.15	0.000288	0.18	Down