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. Author manuscript; available in PMC: 2014 Jul 24.
Published in final edited form as: J Mol Biol. 2013 Apr 16;425(14):2561–2577. doi: 10.1016/j.jmb.2013.04.012

Table 3.

DNA Oligonucleotides Examined

Element Type DNA Sequence Abbreviation
DR3 (CYP3A4) 5′-FAM-TGAACTTGCTGACCC-3′
3′-ACTTGAACGACTGGG-5′
DR3 FAM
5′-TCAGCTGAATGAACTTGCTGACCCTCTGCTTTC-3′
3′-AGTCGACTTACTTGAACGACTGGGAGACGAAAG-5′
DR3 +9/+9
5′-GCTGAATGAACTTGCTGACCCTCTGCTTTC-3′
3′-CGACTTACTTGAACGACTGGGAGACGAAAG-5′
DR3 +6/+9
5′-GAATGAACTTGCTGACCCTCTGCTTTC-3′
3′-CTTACTTGAACGACTGGGAGACGAAAG-5′
DR3 +3/+9
5′-TGAACTTGCTGACCCTCTGCTTTC-3′
3′-ACTTGAACGACTGGGAGACGAAAG-5′
DR3 +0/+9
5′-TCAGCTGAATGAACTTGCTGACCCTCTGCT-3′
3′-AGTCGACTTACTTGAACGACTGGGAGACGA-5′
DR3 +9/+6
5′-TCAGCTGAATGAACTTGCTGACCCTCT-3′
3′-AGTCGACTTACTTGAACGACTGGGAGA-5′
DR3 +9/+3
5′-TCAGCTGAATGAACTTGCTGACCC-3′
3′-AGTCGACTTACTTGAACGACTGGG-5′
DR3 +9/+0
5′-GCTGAATGAACTTGCTGACCCTCTGCT-3′
3′-CGACTTACTTGAACGACTGGGAGACGA-5′
DR3 +6/+6
5′-GAATGAACTTGCTGACCCTCT-3′
3′-CTTACTTGAACGACTGGGAGA-5′
DR3 +3/+3
5′-AACTTGCTGACCCTCTGCTTTC-3′
3′-TTGAACGACTGGGAGACGAAAG-5′
DR3 −2/+9
5′-TCAGCTGAATGAACTTGCTGAC-3′
3′-AGTCGACTTACTTGAACGACTG-5′
DR3 +9/−2
5′-AACTTGCTGAC-3′
3′-TTGAACGACTG-5′
DR3 −2/−2
ER6 (CYP3A4) 5′-FAM-TGAACTCAAAGGAGGTCA-3′
3′-ACTTGAGTTTCCTCCAGT-5′
ER6 FAM
5′-CATAGAATATGAACTCAAAGGAGGTCAGTGAGTGGT-3′
3′-GTATCTTATACTTGAGTTTCCTCCAGTCACTCACCA-5′
ER6 +9/+9
5′-AGAATATGAACTCAAAGGAGGTCAGTGAGTGGT-3′
3′-TCTTATACTTGAGTTTCCTCCAGTCACTCACCA-5′
ER6 +6/+9
5′-ATATGAACTCAAAGGAGGTCAGTGAGTGGT-3′
3′-TATACTTGAGTTTCCTCCAGTCACTCACCA-5′
ER6 +3/+9
5′-TGAACTCAAAGGAGGTCAGTGAGTGGT-3′
3′-ACTTGAGTTTCCTCCAGTCACTCACCA-5′
ER6 +0/+9
5′-CATAGAATATGAACTCAAAGGAGGTCAGTGAGT-3′
3′-GTATCTTATACTTGAGTTTCCTCCAGTCACTCA-5′
ER6 +9/+6
5′-CATAGAATATGAACTCAAAGGAGGTCAGTG-3′
3′-GTATCTTATACTTGAGTTTCCTCCAGTCAC-5′
ER6 +9/+3
5′-CATAGAATATGAACTCAAAGGAGGTCA-3′
3′-GTATCTTATACTTGAGTTTCCTCCAGT-5′
ER6 +9/+0
5′-AGAATATGAACTCAAAGGAGGTCAGTGAGT-3′
3′-TCTTATACTTGAGTTTCCTCCAGTCACTCA-5′
ER6 +6/+6
5′-ATATGAACTCAAAGGAGGTCAGTG-3′
3′-TATACTTGAGTTTCCTCCAGTCAC-5′
ER6 +3/+3
5′-AACTCAAAGGAGGTCAGTGAGTGGT-3′
3′-TTGAGTTTCCTCCAGTCACTCACCA-5′
ER6 −2/+9
5′-CATAGAATATGAACTCAAAGGAGGT-3′
3′-GTATCTTATACTTGAGTTTCCTCCA-5′
ER6 +9/−2
5′-AACTCAAAGGAGGT-3′
3′-TTGAGTTTCCTCCA-5′
ER6 −2/−2