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. 2013 Jul;13(7):479–488. doi: 10.1089/vbz.2011.0870

Table 1.

Details of the Japanese Encephalitis Virus Isolates Used in This Study

Isolate Origin Year Host Genotype GenBank accession no.
Ishikawab Japan 1998 Mosquito GI ABO51292
KV1899b Korea 1999 Swine GI AY316157
JEV/sw/Mie/40/2004b Japan 2004 Swine GI AB241118
XJ69b China 2007 Mosquito GI EU880214
DjAr703a West Java 1974 C. quiquefasciatus GII JQ429287
Bennettb Korea 1951 Human GII FJ872376
WTP-70-22b Malaysia 1970 Mosquito GII HQ223286
JKT654c Kapuk, Java 1978 C. tritaeniorhynchus GII HQ223287
JKT657c Kapuk, Java 1978 C. tritaeniorhynchus GII L42157
JKT1105c Kapuk, Java 1979 C. gelidus GII L42155
JKT2219c Kapuk, Java 1979 C. tritaeniorhynchus GII L42165
JKT2363c Kapuk, Java 1979 C. tritaeniorhynchus GII L42163
JKT5441 (U70406)b Indonesia 1981 Mosquito GII U70406
FUb Australia 1995 Human GII AF217620
JKT220507a Jakarta, Java January-1979 Mosquito GII JQ429291
JKT811a Kapuk, Java January-1979 C. tritaeniorhynchus GII JQ429303
JKT1110a Kapuk, Java February-1979 C. tritaeniorhynchus GII JQ429288
JKT1724a Lombok March-1979 C. tritaeniorhynchus GII JQ429304
JKT1749a Kapuk, Java March-1979 C. tritaeniorhynchus GII JQ429305
JKT2254a Lombok March-1979 A. annularis GII JQ429293
JKT2267a Lombok March-1979 A. vagus GII JQ429294
JKT1729a Kapuk, Java April-1979 C. tritaeniorhynchus GII JQ429289
JKT1754a Kapuk, Java April-1979 C. tritaeniorhynchus GII JQ429290
JKT2212a Kapuk, Java October-1979 C. tritaeniorhynchus GII JQ429292
JKT2303a Kapuk, Java November-1979 C. tritaeniorhynchus GII JQ429295
JKT2329a Kapuk, Java November-1979 C. tritaeniorhynchus GII JQ429298
JKT2352a Kapuk, Java November-1979 C. tritaeniorhynchus GII JQ429299
JKT2362a Kapuk, Java November-1979 C. tritaeniorhynchus GII JQ429296
JKT2380a Kapuk, Java November-1979 C. vishnui GII JQ429297
JKT4312a Kapuk, Java December-1979 C. gelidus GII JQ429300
JKT4331a Kapuk, Java December-1979 C. tritaeniorhynchus GII JQ429301
JKT4332a Kapuk, Java December-1979 C. tritaeniorhynchus GII JQ429302
JKT5441a Indonesia June-1980 Mosquito GII JQ429306
Matsunagab Japan 1939 Human GIII FJ872381
Roumb Korea 1946 Human GIII FJ872377
Equineb Japan 1947 Equid GIII FJ872378
Tairab Japan 1948 Human GIII FJ515933
Beijing-1b China 1949 Mosquito GIII L48961
SA14b China 1954 Mosquito GIII JEU14163
HV1b Taiwan 1958 Human GIII AF098735
JaGAr01b Japan 1959 Mosquito GIII AF069076
JaTH160b Japan 1960 Human GIII AB269326
Lingb Taiwan 1965 Human GIII L78128
JaOH0566b Japan 1966 Human GIII AY508813
GP78b India 1978 Human GIII AF075723
JKT1724 (U70404)b Lombok 1979 Mosquito GIII U70404
JKT1749 (U70405)b Kapuk, Java 1979 Mosquito GIII U70405
JaOArS982b Japan 1982 Mosquito GIII NC_001437
K87P39b Korea 1987 Mosquito GIII AY585242
CH1392b Taiwan 1990 Mosquito GIII AF254452
T1P1b Taiwan 1997 Mosquito GIII AF254453
05734b India 2005 Human GIII EF623988
JKT27-085a Central Java January-1987 Mosquito GIII JQ429307
JKT27-087a Central Java January-1987 Mosquito GIII JQ429308
“Korea Jap B”b Korea circa 1950 Unknown GIII FJ872379
V9-3901b Japan circa 1950 Human GIII FJ872382
V9-3902b Japan circa 1950 Human GIII FJ872383
V9-4399b Japan circa 1950 Human GIII FJ872380
JKT8442c Bali 1980 C. tritaeniorhynchus GIV L42159
JKT6468b Flores 1981 C. tritaeniorhynchus GIV AY184212
JKT7003c Java 1981 Mosquito GIV L42161
JKT7887c Java 1981 Mosquito GIV L42160
JKT9092c Bali 1981 Mosquito GIV L42158
JKT7089a Bantul, Java June-1981 C. vishnui GIV JQ429309
JKT7180a Central Java July-1981 C. tritaeniorhynchus GIV JQ429310
MVE-1-51d Australia 1951 Human   AF161266
a

Indonesian viruses sequenced in this study.

b

The nucleotide sequences of these viruses were retrieved from GenBank to generate phylogenies.

c

The nucleotide sequences of these Indonesian JEV isolates were downloaded from GenBank to determine the overall distribution of Indonesian JEV isolates according to year of collection and genotype.

d

All viruses are JEV except for MVE-1-51, which is a strain of Murray Valley encephalitis virus.

C., Culex; A., Anopheles.