Table 1.
Summary of the results of the Markov models for selected codons
Algorithm |
2-3 Markov model |
5-3 Markov model |
||||||
---|---|---|---|---|---|---|---|---|
Codons | % organisms with excessa | Average log ratio | Correlation value | R value | % organisms with excessa | Average log ratio | Correlation value | R value |
TGG |
96 |
0.0011 |
0.003 |
0.58 |
96 |
0.0011 |
0.003 |
0.51 |
TGC |
93 |
0.0009 |
0.002 |
0.45 |
93 |
0.0009 |
0.002 |
0.45 |
TGT |
90 |
0.0008 |
0.002 |
0.31 |
90 |
0.0008 |
0.002 |
0.29 |
TGA |
94 |
0.0008 |
0.002 |
0.46 |
93 |
0.0008 |
0.002 |
0.40 |
TAG |
38 |
-0.0009 |
-0.009 |
-0.58 |
39 |
-0.0011 |
-0.012 |
-0.62 |
TAA |
47 |
-0.0005 |
-0.007 |
-0.50 |
44 |
-0.0008 |
-0.010 |
-0.61 |
All Stop Codons | 85 | 0.0005 | 0.001 | 0.31 | 83 | 0.0004 | 0.001 | 0.20 |
a Percent of the 1,976 organisms tested with excess of the codon off-frame.