Table 3.
List of the top 20 longest contigs originated from the 454 run of brain-hypophysis-gonad axis tissues of turbot ( S . maximus)
| Contig number | Length | No. reads | Average coverage per nucleotide | % GC | Annotation | E-value | Accession number | Database |
|---|---|---|---|---|---|---|---|---|
| 358 |
5,012 |
584 |
33.2 |
43.4 |
Cytochrome c oxidase subunit 3 |
1.00E-127 |
UniRef90_C7S7B2 |
Uniref90 |
| 4,333 |
4,486 |
133 |
8.3 |
45.7 |
Adrenodoxin-like protein mitochondrial |
2.00E-60 |
UniRef90_Q08C57 |
Uniref90 |
| 2,251 |
4,042 |
146 |
10.5 |
46.1 |
SSRU rRNA Cavia porcellus |
3.00E-13 |
AAKN02033512 |
SSU |
| 425 |
4,010 |
293 |
23.3 |
52.1 |
Aspartate/tyrosine/aromatic aminotransferase |
1.00E-101 |
YDR111c |
COG |
| 1,894 |
3,992 |
212 |
13.6 |
44.3 |
unknown |
|
|
|
| 2,165 |
3,964 |
158 |
11.0 |
50.4 |
Ubiquitin carboxyl-terminal hydrolase |
0 |
UniRef90_B7Z855 |
Uniref90 |
| 762 |
3,896 |
464 |
32.4 |
48.6 |
Proliferation-associated 2G4b |
1.00E-165 |
dre:323462 |
KEGG |
| 1,956 |
3,797 |
182 |
13.8 |
47.5 |
Novel protein (Zgc:55794) |
0 |
UniRef90_Q1LWK5 |
Uniref90 |
| 9,828 |
3,757 |
54 |
4.3 |
44.1 |
FAM3C |
9.00E-57 |
UniRef90_B5X712 |
Uniref90 |
| 12,120 |
3,753 |
63 |
4.3 |
47.0 |
Zgc:165446 protein |
1.00E-65 |
UniRef90_A6H8R7 |
Uniref90 |
| 3,201 |
3,707 |
128 |
10.3 |
46.6 |
Novel protein similar to WDR44 |
0 |
dre:569045 |
KEGG |
| 2,212 |
3,700 |
116 |
9.1 |
38.6 |
Osteocalcin |
2.00E-12 |
UniRef90_D2XEB2 |
Uniref90 |
| 1,541 |
3,673 |
181 |
14.7 |
48.3 |
Cell division cycle |
1.00E-105 |
UniRef90_Q6PFU4 |
Uniref90 |
| 2,167 |
3,623 |
173 |
12.3 |
45.1 |
M-phase phosphoprotein 10 |
1.00E-148 |
dre:323426 |
KEGG |
| 280 |
3,613 |
287 |
27.3 |
44.9 |
NADH dehydrogenase subunit 5 |
0 |
UniRef90_C7S7B6 |
Uniref90 |
| 4,193 |
3,611 |
85 |
6.2 |
41.3 |
Suppressor of tumorigenicity 7 protein |
1.00E-34 |
UniRef90_Q1RLU8 |
Uniref90 |
| 644 |
3,571 |
531 |
42.1 |
46.3 |
RAD1 homolog |
1.00E-145 |
UniRef90_Q6P2T4 |
Uniref90 |
| 1,248 |
3,569 |
127 |
10.8 |
43.8 |
60S ribosomal protein |
2.00E-45 |
UniRef90_P61513 |
Uniref90 |
| 2,845 |
3,555 |
106 |
8.1 |
43.4 |
NF-kappaB repressing factor |
1.00E-79 |
gga:422370 |
KEGG |
| 5,634 | 3,550 | 84 | 5.8 | 47.1 | WD repeat domain phosphoinositide | 0 | UniRef90_Q5MNZ6 | Uniref90 |