Table 3. Predicted domain architecture of resistance gene candidates in P . peruviana related to the first and second layer of defense.
Predicted Protein Domains | Letter code | Isotigs with Hits | Defense layer |
---|---|---|---|
LRR-Pkinase | LPk | 14 | PTI |
LysM | LysM | 2 | |
LysM-Pkinase | LysMPk | 3 | |
NBS | N | 10 | ETI |
NBS-LRR | NL | 10 | |
TIR | T | 2 | |
TIR-NBS-LRR | TNL | 8 | |
TIR-CC-NBS-LRR | TCNL | 1 | |
CC | C | 1 | |
CC–NBS | CN | 4 | |
CC–NBS-LRR | CNL | 9 | |
Other* | 10 | ||
Total | 74 |
Additional domain LRR (six isotigs) and Pkinase (four isotigs) that might be implicated in processes other than defense.