Table 2. Predicting virulence nodes based on the seed numbers connected within the local neighbourhood.
Number of nodes connected to a given number of seeds | ||||
Number of seeds | Integrated | Protein-protein interaction | Co-expression | Sequence similarity |
2 | 95 | 25 | 33 | 39 |
3 | 58 | 48 | 11 | 23 |
4 | 32 | 6 | 3 | 25 |
5 | 23 | 0 | 0 | 12 |
6 | 3 | 0 | 0 | 1 |
7 | 3 | 0 | 0 | 0 |
8 | 1 | 0 | 0 | 0 |
The number of seeds to which each predicted virulence node is connected, in the four networks is shown. A node linked to 2 or more seed nodes is termed a prediction. Some predictions have links to multiple seeds.