Table 1. Genes with expression differences of 1.5-fold or greater in ΔmamA or complemented strains compared to the wildtype parent (H37Rv) in aerobic growth conditions.

		Log2 expression ratio		p a
Gene	Symbol	ΔmamA/wildtype	ΔmamA::mamA/wildtype	Raw	FDRb	Distance (bp) to upstream MamA sitec
Rv3263	mamA	−4.05	2.51	2.0×10−12	8.2×10−9	3213
Rv0142		−1.32	−0.16	4.0×10−6	4.2×10−3	143
Rv1239c	corA	−0.80	−0.22	0.037	1.0	43
Rv3197A	whiB7	−0.75	0.02	0.00067	0.31	336
Rv3083		−0.72	−0.19	0.0049	0.97	8
Rv0102		−0.72	0.03	0.0011	0.41	3
Rv3085		−0.68	−0.12	0.011	1.0	8d
Rv3084	lipR	−0.62	−0.06	0.026	1.0	8d
Rv3378c		−0.59	−0.07	0.038	1.0	1067
tRNA-pro	proU	−0.15	−1.91	0.00034	0.24	2480 or 6630e
Rv2463	lipP	0.016	−2.62	8.18×10−9	1.7×10−5	2544 or 476e
tRNA-glyf	glyV	−0.0089	−2.66	2.54×10−7	0.00035	2430

^aANOVA.

^bMethod of Benjamini and Hochberg.

^cDistance from start of ORF to nearest upstream MamA site.

^dDistance from start of first ORF in operon (Rv3083) to nearest upstream MamA site.

^eDistances in wildtype/ΔmamA and complemented strains, respectively; complementation vector integrates in this region.

^fComplementation vector integrates in this gene.