Table 2.
Ranking performance comparison
|
The proposed method |
Random walk approach |
||
|---|---|---|---|
| Gene | Ranking | Gene | Ranking |
| RB1 |
89 |
RB1 |
60 |
| CCND1 |
105 |
EP300 |
119 |
| EP300 |
142 |
CCND1 |
227 |
| ERBB2 |
171 |
ERBB2 |
326 |
| MAP2K4 |
450 |
NTRK3 |
685 |
| GATA3 |
463 |
MAP2K4 |
1167 |
| BAP1 |
530 |
BAP1 |
1231 |
| PBRM1 |
1626 |
GATA3 |
3042 |
| ETV6 |
2952 |
PBRM1 |
3102 |
| NTRK3 |
4030 |
ETV6 |
3355 |
| SLC22A18 |
9254 |
SLC22A18 |
10971 |
|
top 10% average |
279 |
|
545 |
| all 11 test genes average | 1801 | 2207 | |