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. Author manuscript; available in PMC: 2014 May 17.
Published in final edited form as: J Org Chem. 2013 Apr 29;78(10):5051–5055. doi: 10.1021/jo400406g

Figure 3.

Figure 3

left: Optimized Structure of 5d (orange), 4a (yellow) and 1h (green) in the HDAC2 pocket: the optimized structure of fragment and model complex is superposed into the crystal structure of HDAC2 (PDB 3MAX). The binding conformation of 4a (middle) and 1h (right) in HDAC2 binding site after QM/MM optimization