Table 3.
Description of SSRs used for MLPs analysis of C. albicans.
| Locus | Ch | Gene product | Repeat motif | Location | DP | Primers | References | |
|---|---|---|---|---|---|---|---|---|
| 1 | EF3 | 5 | Elongation factor 3 | (TTC)n (TTTC)n | Upstream region | 0.88(1)
0.97(1+3+4) 0.999(ALL except 2+12) |
F: TTTCCTCTTCCTTTCATATAGAA R: GGATTCACTAGCAGCAGACA |
[59, 60, 64, 69, 73] |
| 2 | ERK1 | 4 | Extracellular-signal-regulated kinase | (CAGGCT)n(CAAGCT)n
- -(CAA)n- -(GCCGCA)n - -(CTT)n |
Coding region | nr | F: CGACCACGTCATCAATAGAAATCG R: CGTTGAATGAAACTTGACGAGGGG |
[64, 70] |
| 3 | CARE-BEME | 6 | nc | (GAA)n | Noncoding region | 0.999(ALL except 2+12) | F: GAATCATGAAACAGAAACTG R: TGGGTGAAGGATAATCTGCA |
[72, 73] |
| 4 | CDC3 | 1 | Cell division cycle protein | (AGTA)n | Downstream region | 0.97(1+3+4)
0.999(ALL except 2+12) |
F: CAGATGATTTTTTGTATGAGAAGAA R: CAGTCACAAGATTAAAATGTTCAAG |
[60, 73] |
| 5 | HIS3 | 2 | Imidazole glycerol phosphate dehydratase | (ATTT)n | Downstream region | 0.97(1+3+4)
0.999(ALL except 2+12) |
F: TGGCAAAAATGATATTCCAA R: TACACTATGCCCCAAACACA |
[60, 73] |
| 6 | KRE6 | 3 | β-1,6-Glucan synthesis | (AAT)n | Coding region | 0.999(ALL except 2+12) | F: CAAGCTTATAGTGGCTACTA R: CCAACACTGATACATCTCG |
[64, 73] |
| 7 |
LOC4
(MRE11) |
7 | Double-strand break repair protein | (GAA)n | Coding region | 0.999(ALL except 2+12) | F: GTAATGATTACGGCAATGAC R: AGAACGACGTGTACTATTGG |
[64, 73] |
| 8 | ZNF1 | 4 | Zinc finger transcription factor | (CAA)n | Coding region | 0.999(ALL except 2+12) | F: CCATTACAGCTGAACCAGCGAGGG R: CGCTAGGTAACCTACAGATTGTGGC |
[64, 73] |
| 9 | CAI | 4 | nc | (CAA)n- -(CAA)n | Noncoding region | 0.967(9)
0.998(9+10+12) 0.999(ALL except 2+12) |
F: ATGCCATTGAGTGGAATTGG R: AGTGGCTTGTGTTGGGTTTT |
[44, 66, 73] |
| 10 | CAIII | 5 | nc | (GAA)n | Noncoding region | 0.853(10)
0.998(9+10+12) 0.999(ALL except 2+12) |
F: TTGGAATCACTTCACCAGGA R: TTTCCGTGGCATCAGTATCA |
[44, 73] |
| 11 | CAV | 3 | nc | (ATT)n | Noncoding region | 0.853(11)
0.999(ALL except 2+12) |
F: TGCCAAATCTTGAGATACAAGTG R: CTTGCTTCTCTTGCTTTAAATTG |
[44, 73] |
| 12 | CAVI | 2 | nc | (TAAA)n | Noncoding region | 0.853(12)
0.998(9+10+12) |
F: ACAATTAAAGAAATGGATTTTAGTCAG R: TGCTGGTGCTGCTGGTATTA |
[44] |
| 13 | CAVII | 1 | nc | (CAAAT)n | Noncoding region | 0.670(13)
0.999(ALL except 2+12) |
F: GGGGATAGAAATGGCATCAA R: TGTGAAACAATTCTCTCCTTGC |
[44, 73] |
Discriminatory power (DP) based on one or various loci is indicated in brackets according to the row number. Dashed line indicates various nucleotides that separate different microsatellites in the sequence. Ch: chromosome; nc: not corresponding; nr: not reported.