Table 3. Comparison of VCMM with other methods using SNP genotyping platforms.

			Number			Proportion (%)
	Chip		VCMM	GATK	SAMtools	VCMM	GATK	SAMtools
WGS	OmniExpress BeadChip	Concordant	641,860	641,538	639,112	99.816	99.766	99.389
		FN	1,083	1,366	3,832	0.168	0.212	0.595
		FP	98	137	97	0.015	0.021	0.015
WES	Exome BeadChip	Concordant	190,147	190,137	189,825	99.974	99.968	99.804
		FN	36	46	361	0.019	0.024	0.190
		FP	14	14	11	0.007	0.007	0.006