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. Author manuscript; available in PMC: 2014 Jul 1.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2013 May 1;22(7):1239–1251. doi: 10.1158/1055-9965.EPI-12-1226

Table 2.

Shared Nonsense and Splice Site SNVs

Chr Position rsID Gene DNA
Change
AA
Change
Families
1 85,546,961 - WDR63 G/T GLU>stop 6
148,932,885 rs1048214 LOC645166 C/T GLN>stop 5
152,277,622 - FLG G/T SER>stop 9

2 166,904,221 - SCN1A G/T TYR>stop 16

3 40,231,748 - MYRIP A/T LYS>stop 15
75,787,516 - ZNF717 C/G Splice Site 4

4 77,660,829 rs73826426 SHROOM3 C/A TYR>stop 8, 10

6 49,425,475 - MUT G/A ARG>stop 6
121,560,230 - C6orf170 G/A ARG>stop 2
168,226,602 - C6orf124 C/T TRP>stop 7

7 76,751,068 rs71555938 CCDC146 G/C TYR>stop 16

10 123,846,924 - TACC2 C/T GLN>stop 4
135,490,903 rs36130162 DUX1 C/T ARG>stop 16

11 1,857,515 - SYT8 G/A Splice Site 14

12 4,870,307 rs61758971 GALNT8 C/T GLN>stop 14
109,690,964 - ACACB G/A Splice Site 14

13 24,243,246 - TNFRSF19 C/T ARG>stop 12

14 21,779,981 - RPGRIP1 A/G Splice Site 16
58,832,019 rs62621193 ARID4A G/A Splice Site 14

15 75,562,499 - GOLGA6C C/T GLN>stop 14
78,807,407 - AGPHD1 T/A TYR>stop 14

16 24,873,990 - SLC5A11 G/A TRP>stop 2
84,495,318 rs4782970 ATP2C2 A/C Splice Site 15

17 45,234,277 - CDC27 A/C Splice Site 13, 14

18 14,513,786 rs8095431 POTEC T/C Splice Site 4

19 11,943,225 - ZNF440 C/T ARG>stop 12
40,195,184 - LGALS14 G/A Splice Site 16
43,699,204 - PSG4 C/A GLU>stop 4
56,459,551 - NLRP8 C/T ARG>stop 6

20 2,597,716 - TMC2 A/T Splice Site 1, 9
30,226,904 - COX4I2 T/G Splice Site 14

22 44,287,073 - PNPLA5 G/A GLN>stop 2

X 2,832,668 - ARSD A/G Stop>GLN 9, 15
55,185,663 - FAM104B T/G Splice Site 15
103,294,760 rs2301384 H2BFM C/T GLN>stop 11, 13, 14