Table 2. Number of discovered and validated SNPs for intercept and slope for the traits on the observed scale.

Trait	Discovery Dataset (P ≤ 0.001)	FDR	Validation Dataset (P ≤ 0.01)
Intercept protein yield	450	0.07	69
Slope protein yield	351	0.09	44
Intercept fat yield	465	0.07	118
Slope fat yield	385	0.08	99
Intercept milk yield	415	0.08	104
Slope milk yield	416	0.08	98

The FDR q-values (FDR) of the significant SNP with the largest error probability (P ≈ 0.001) in the discovery dataset are shown. SNP, single-nucleotide polymorphism; FDR, false-discovery rate.