Table 1.
Full-length HERV-K (HML-2) proviruses and their locations in the human genomea.
| Provirus | Type | Length | NCBI accession # | Chrom. | UCSC coordinatesa |
|---|---|---|---|---|---|
| K101 | I | 9,175 | AF164609 | 22q11.21 | 18,926,187–18,935,361 |
| K102 | I | 9,180 | AF164610 | 1q22 | 155,596,457–155,605,636 |
| K103b | I | 968 | AF164611b | 10p12.1 | 27,182,399–27,183,366 |
| K104 | II | 9,446 | AF164612 | 5p13.3 | 30,486,760–30,496,205 |
| K105c | 968 | AF165235–AF165234d | Un_g1000219 | 175,210–176,178 | |
| I | 6,361 | and JQ790992 | |||
| K106 | I | 9,159 | AF165240–AF165241d | 3q13.2 | 112,743,124–112,752,282 |
| K107/K10 | I | 9,180 | AF164613 | 5q33.3 | 156,084,717–156,093,896 |
| K108 | II | 17,975e | AF164614 | 7p22.1 | 4,622,057–4,640,031 |
| K109 | II | 9,422 | AF164615 | 6q14.1 | 78,426,662–78,436,083 |
| K110 | I | 9,232 | AF165258–AF165259d | 1q23.3 | 160,660,575–160,669,806 |
| K111 | I | 9,160 | GU476554 | 11q23.3 | 118,591,724–118,600,883 |
| K112/K33 | II | 9,463 | DQ112100 | 10p14 | 6,866,141–6,875,603 |
| K113f | AF387847–AF387849d | 19p12 | 21,841,536–21,841,541f | ||
| II | 9,473 | and AY037928 | |||
| K114/K36 | II | 9,466 | DQ112101 | 11q22.1 | 101,565,794–101,575,259 |
| K115 | AF387846–AF387848d | 8p23.1 | 7,355,397–7,364,859 | ||
| II | 9,463 | and AY037929 | |||
| K116/K50B | I | 9,180 | DQ112147 | 3q27.2 | 85,280,336–185,289,515 |
| K117/K41 | II | 9,457 | DQ112140 | 12q14.1 | 58,721,242–58,730,698 |
| K118/K(II) | I | 9,123 | AB047240.1 | 3q12.3 | 101,410,737–101,419,859 |
| K(I) | II | 9,138 | AB047209 | 3q21.2 | 125,609,302–125,618,439 |
| K4 | I | 6,373 | DQ112097 | 1p31.1 | 75,842,771–75,849,143 |
| K5 | I | 7,229 | DQ112093 | 4q32.3 | 165,916,840–165,924,068 |
| K50F | II | 9,518 | DQ112151 | 19q13.12 | 37,597,549–37,607,066 |
| K51 | I | 6,738 | DQ112098 | 19p12 | 22,757,824–22,764,561 |
| K60 | I | 9,657 | DQ112108 | 21q21.1 | 19,935,621–19,940,996 |
| 3p12.3 | II | 8,685g | NDh | 3p12.3 | 75,600,465–75,609,150 |
| 4p16.1 | II | 9,594 | NDh | 4p16.1 | 9,659,580–9,669,174 |
| K17B | II | 9,584 | DQ112124 | 4p16.1 | 9,123,515–9,133,075 |
| 4p16.3 | II | 9,588 | NDh | 4p16.3 | 3,979,051–3,988,639 |
| K7 | II | 9,554 | DQ112131 | 11p15.4 | 3,468,656–3,478,209 |
| 8p23.1c | II | 9,527 | NDh | 8p23.1 | 12,073,970–12,083,497 |
| K27 | II | 10,117 | DQ112118 | 8p23.1 | 8,054,700–8,064,221 |
| KO1D130352 | II | 9,516 | DQ112134 | 8p23.1 | 12,316,492–12,326,007 |
aLocations in the human genome according to the UCSC Human Genome Assembly, February 2009 (GRCh37/hg19).
bK103 is present as a solo LTR in the genome assembly. The accession number is for the full-length provirus.
cK105 is present as a solo LTR (chrUn_gl000219:175,110–176,278) inserted in centromeric region (CER satellite) DNA.
dAccession numbers for the flanking sequences.
eK108 is present as a tandemly duplicated provirus in the genome assembly.
fK113 is absent from the genome assembly (GRCh37/hg19); coordinates for the duplicated target sequence at insertion site are annotated.
gMost of the 5′ LTR is deleted.
hThese proviruses are present in the UCSC Human Genome Assembly, February 2009 (GRCh37/hg19), but have not been characterized independently and do not have accession numbers.