Table 1.
NetLogo Two-Cell Model Parameters (38) | Range | Value | |
---|---|---|---|
World parameters (2) | |||
Height | 1–Max | 33 Patches | |
Width | 1–Max | 57 Patches | |
ECM parameters (6) | |||
Distance between “binding sites” | 1.0 Patches | ||
Max length of a fiber | 100 Turtles | ||
Initial fiber max deviation | 15° | ||
Degree of cross linking | 100% | ||
Fiber density | 0–Max a | 40 | |
Edge weight | 0–100% | 100% or 99.5% | |
Cell parameters (5) | |||
Cell radius | 2 Patches | ||
Number of cells | 2 | ||
“Membranes” per cell | 30 | ||
Distance between cells | 0–Max a | 16 Patches | |
Cell weight | 0–100% | 90% | |
Rules (7) | |||
Force generation by pulling | |||
Initial proximity for “membranes” to bind fibers | 1.0 Patches | ||
Proximity condition 1 | 0.5 Patches | ||
Proximity condition 2 | 1.3 Patches | ||
Cell shape and directional migration | |||
“Pseudopodia” max length | Not defined | ||
Number of “membranes”: | |||
That can exceed 2.5 times radius | 0 | ||
That can exceed 1.5 times radius | 1 | ||
That can exceed 1.1 times radius | 8 | ||
Other | |||
Iterations to reset “inactive membranes” | 6 | ||
Links (18) | Spring constant | Resting length | Repulsion constant |
“Membranes” | |||
Between first neighbors | 1.000 | 0.418 | 0.000 |
Between second neighbors | 1.000 | 0.832 | 0.000 |
Between third neighbors | 1.000 | 1.236 | 0.000 |
Other | |||
Between the “nucleus” and a “membrane” | 0.900 | 1.800 | 0.005 |
Between a “membrane” and a fiber | 1.000 | 0.100 | 0.000 |
About pivot points on a fiber | 0.500 | 0.977 | 0.060 |
Maximum value undefined.