Table 1. Gene-specific primers (GSP) for the CCAP receptor in R. prolixus.
A) Oligo name | Oligo Sequence (5′ to 3′) |
5′ RACE primers | |
CCAPR_FOR1 | AGCACTGGATAATGGACTGG |
CCAPR_FOR2 | AGCATTTGCAGATTTATCAGTTG |
CCAPR_FOR3 | ATCGTCTGGATGCAATTACAAG |
CCAPR_FOR4 | GGTGGAGATAAGGGAGATGAC |
CCAPR_FOR5 | CCACGTTTATTCAAAGTCTTGC |
3′ RACE primers | |
CCAPR_REV1 | GATTATCTTGGTTACGAATAGTGG |
CCAPR_REV2 | GGC TAC TGC GAT ATT TGT TTG AG |
CCAPR_REV3 | TGT CAT CTC CCT TAT CTC CAC C |
CCAPR_REV4 | TCCATTCAACCGTGATCC |
CCAPR_REV5 | CCC AAA ACA ATC GCT GC |
B) Oligo name | Oligo Sequence (5′ to 3′) |
CCAPR specific primer for qPCR | |
qPCR _CCAPR_F1 | GCTTAGCACTGGATAATGGACTG |
qPCR _CCAPR_R1 | TCAATACGCTGATCAGTCCAACT |
Reference genes for qPCR | |
qPCR _Actin F1 | AGAGAAAAGATGACGCAGATAATGT |
qPCR _Actin R1 | CGGCCAAATCCAATCG |
qPCR _RP48_F1 | GTGAAACTCAGGAGAAATTGGC |
qPCR _RP48_R1 | GCATCATCAACATCTCTAATTCCTTG |
C) Oligo name | Oligo Sequence (5′ to 3′) |
Primers to amplify full ORF | |
CCAPR_ORF_F1 | TTAGCACTGGATAATGGACTGG |
CCAPR_ORF_F2 | ATGGACTGGGTTATAAGAGATAATTAC |
CCAPR_ORF_R1 | CTATTCGTAACCAAGATAATCTCTAAATG |
CCAPR_ORF_R2 | CACTATTCGTAACCAAGATAATCTCTAA |
Primers for introduce Kozak sequence | |
Kozak_CCAPR_ORF_F2 | GCCACC ATGGACTGGGTTATAAGAG |
(A) Primers used for 5′ and 3′ rapid amplification of cDNA ends (RACE). (B) Transcript specific primers for real time PCR for the spatial expression profile. (C) Primers for cloning the complete open reading frame (ORF), and for introducing a Kozak translation initiation sequence at the 5′UTR.