Table 2.

Location of and gene information for SNPs associated (P < 1 × 10^-4) with meat quality traits

Trait	Chromosome	SNPs	Position	Alleles	MAF1	P_value2	P_adjust3	R2 4	Nearest Gene	Distance (Kb)5
DMBr	2	Gga_rs14206277	78152161	G/A	0.338	2.01E-05	0.34	0.071	FAM105A	within
DMTh	14	Gga_rs14086206	14720651	A/G	0.340	8.38E-05	1.40	0.077	TBC1D24	D 20.6
DMBr	Z	GGaluGA346234	1626487	G/A	0.016	1.16E-05	0.19	0.075	ST8SIA5	within
IMFBr	1	Gga_rs13878108	65617257	G/A	0.240	6.49E-05	1.09	0.063	MGST1	D 183.1
IMFBr	3	GGaluGA217414	40654853	A/G	0.116	9.30E-05/2.59E-06	1.56	0.061	NTPCR	U 109.9
IMFBr	4	GGaluGA255658	43311293	G/A	0.100	3.46E-05/5.61E-09	0.58	0.057	AGA	U 330.8
IMFBr	5	Gga_rs14524377	27009717	G/A	0.193	5.41E-05	0.91	0.066	TYRO3	U 73.6
IMFBr	Z	GGaluGA348872	18701354	A/G	0.025	2.14E-05/4.28E-07	0.36	0.059	KIF2A	U 122.3
Meat color
L*	2	GGaluGA137635	23472767	A/G	0.302	7.04E-05	1.18	0.068	COL1A2	U 58.0
L*	18	GGaluGA121429	6990031	C/A	0.412	8.96E-05	1.50	0.065	KPNA2	U 0.2
L*	18	GGaluGA121456	7112093	G/A	0.383	7.19E-05	1.21	0.068	PSMD12	U 34.3
b*	27	Gga_rs15237721	1597620	G/A	0.364	4.85E-05	0.81	0.077	FTSJ3	U 2.4
Skin color
L*	2	GGaluGA159190	99182734	G/A	0.122	7.62E-05	1.28	0.073	PTPN2	U 130.6
L*	13	Gga_rs14058862	10586210	A/G	0.114	9.39E-05	1.57	0.071	SPINK5	U 28.1
L*	13	Gga_rs15697794	11284741	G/A	0.049	9.61E-05	1.61	0.058	CLINT1	U 15.6
L*	21	Gga_rs16180462	3645146	G/A	0.162	8.76E-05	1.47	0.072	PGD	U 62.7
a*	19	Gga_rs15044922	2083895	G/A	0.213	5.10E-05	0.85	0.077	MIR1587	D 301.0
b*	6	GGaluGA305921	33306370	A/G	0.412	3.24E-05	0.54	0.089	BUB3	D 195.5

¹MAF minor allele frequency; ²the bold p-values of SNPs are the genome-wide significance by the general linear model (GLM); ³p-adjust indicates the p-value adjusted by “LD adjusted” Bonferroni; ⁴R², SNP indicates the ratio of phenotypic variation; ⁵U indicates that the SNP is upstream of the gene, while D indicates that the SNP is downstream of the gene. These abbreviations are also used in Table 3.