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Summary of the Notation for (Dis)Similarity Measures Between Base Pair Probabilities of Wild-Type and Mutant
| Probability distribution | |
| P | Full base pairing probabilities |
| π | Position-wise pairing probabilities |
| ξ< | Position-wise, upstream |
| ξ> | Position-wise, downstream |
| ξ<> | Position wise, distinguishing up- and downstream |
| Similarity measure | |
| r | Pearson correlation |
| d | Euclidean distance (L2 norm) |
| Optimization | |
| r, d | Global |
| rmin, dmax | Best local interval |
| r#, d# | Approximate optimization for scanning |
