| EF31UF |
GATAGTTCTTGTTTCGACAAATCAC |
Amplify upstream of ϕEf11 ORF 31 |
| EF31UR |
CTGTCGACGTTCCTGCAGAGCTCTAAATAAATATGGCAAGTA |
Amplify upstream of ϕEf11 ORF 31 |
| EF37DF |
CTGGATCCATGTGCTATGATTACTCAAAATTAGCAG |
Amplify downstream of ϕEf11 ORF 36 |
| EF37DR |
CTGCATGCCCTTTACCAGTAATTTTCGGCGT |
Amplify downstream of ϕEf11 ORF 36 |
| RKnpF |
CTCCATGGTCTCTCCTGCAGATAGAATTCTCATGTTTGACAGCTTATCA |
Amplify nisR and nisK
|
| RKaxR |
CTGCATGCTCTCTCGACGTCGCCAGTTAATAGTTTGCCGAA |
Amplify nisR and nisK
|
| PNISaF |
CTGACGTCACAAAAGCGACTCATAGAATTATTTCCTCC |
Amplify Erm-PnisA
|
| PNISR |
GCTTATCGAAATTAATACGACTCACTATAGG |
Amplify Erm-PnisA
|
| EF31UUF |
AAGAGCACCTCAAATTCCAGT |
Detection of ϕEf11 ΔORFs 31–36 (upstream) |
| RK5R |
TGATAAGCTGTCAAACATGAGAATTCT |
Detection of ϕEf11 ΔORFs 31–36 (upstream) |
| 37DDR |
TGTGATTTGCATGTAGACATCTCCT |
Detection of ϕEf11 ΔORFs 31–36 (downstream) |
| PNIS3F |
TTGTAAAACAGGAGACTCTGCATG |
Detection of ϕEf11 ΔORFs 31–36 (downstream) |
| EF31MF |
AAGTTGTTTCCGTGTCAACGTGGC |
Detection of ϕEf11 ORF 31 deletion |
| EF31MR |
GTGTCCATCATGGTCGTTTAGCAG |
Detection of ϕEf11 ORF 31 deletion |
| EF36MF |
TTATCAGGGTCTGGTGAATGCG |
Detection of ϕEf11 ORF 36 deletion |
| EF36MR |
GCAACTTATGAGTGAGCGCAA |
Detection of ϕEf11 ORF 36 deletion |
| ϕEf11F |
GAGAGTGGAAGTGGATTCAATG |
Detection of ϕEf11 ORF 43 |
| ϕEf11R |
GCACTTTCATCTAAACTCTCG |
Detection of ϕEf11 ORF 43 |
| EF44F |
ACCAAGATTTGACGCAGAAGTTGCC |
Detection of ϕEf11 ORF 44 |
| EF44R |
TGGCCATCGTCGTCTTTATCTGCT |
Detection of ϕEf11 ORF 44 |
| EF60F |
AGACGTTTGGACCGAATAGCTGGT |
Detection of ϕEf11 ORF 60 |
| EF60R |
TGCGGTAAGCTTCTGCGAATTCAA |
Detection of ϕEf11 ORF 60 |
| Fl1A35F |
GGGAACTAGCAGTTGAAGAATCGC |
Detection of ϕFL1C gp40 |
| Fl1A35R |
TTCCTTTGTACTATCTTGATCTCCA |
Detection of ϕFL1C gp40 |
| Fl1A37F |
GAGCGTTTAGATAAGTCGGATTGG |
Detection of ϕFL1C gp44 |
| Fl1A38R |
CCAAGTTTCTTTAGCCTGGTCACG |
Detection of ϕFL1C gp44 |
