Table 3.
List of ontologies containing information related to crop stress responses.
| Domain | Prefix | Description | Reference/website |
|---|---|---|---|
| Plant Environmental Conditions | EO | Controlled vocabulary for the representation of plant environmental conditions | http://www.gramene.org/db/ontology/search?id=EO:0007359 |
| Gene Ontology | GO | Controlled vocabulary for genes and gene products | [28] |
| Taxonomy Ontology | GR_tax | Representation of the taxonomic tree of plants in the ontology format | http://www.gramene.org/db/ontology/search?id=GR_tax:090165 |
| The Plant-Associated Microbe Gene Ontology | PAMGO | Controlled vocabulary for the interaction of microbes with their hosts | [29] |
| Plant Ontology | PO | Controlled vocabulary for anatomy, morphology and stages of development for all plants | [30] |
| Sequence Ontology | SO | Controlled vocabulary for sequence annotations, for the exchange of annotation data and for the description of sequence objects in databases | [31] |
| Plant Trait Ontology | TO | Controlled vocabulary for phenotypic traits in plants | http://www.gramene.org/db/ontology/search?id=TO:0000387 |